Rmu_sc0008050.1_g000023

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008050.1
N/A
Physical Location & Seq
Reverse (-)
94281 .. 94598
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008050.1_g000023.1.cds

Sequence Viewer

Length: 318 bp
atgactcttgattgctgggaaacattaacggaccttgatctgtcaagaaacaattttgttagtcttcctgcttgcttcaccaaatttgtcaacttgcgggagcttgacttggagggttgcaagagactccgaggaattctggagcttccaccaaacgttaaaccaagaataagaggttgtgaattactggggctgggacaaattgtcgccgtcaattcaagagccaactccgaagcgacaacgccttttcgccggggggggcaagcatcgatggtccccatgttccctgacctgcacagcgcccatctgactcgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

8.49

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AciI CCGC 1 cut(s) 97
AclI AACGTT 1 cut(s) 156
AcsI RAATTY 2 cut(s) 83, 135
AgsI TTSAA 1 cut(s) 219
AhdI GACNNNNNGTC 1 cut(s) 203
AluBI AGCT 2 cut(s) 103, 145
AluI AGCT 2 cut(s) 103, 145
Alw26I GTCTC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 83, 135
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 31, 274
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 2 cut(s) 31, 274
BbsI GAAGAC 1 cut(s) 56
BccI CCATC 2 cut(s) 265, 312
BceAI ACGGC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 300
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 2 cut(s) 31, 274
BmeRI GACNNNNNGTC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 31, 274
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 130, 253
Bse1I ACTGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 130, 253
BseNI ACTGG 1 cut(s) 192
BseYI CCCAGC 2 cut(s) 15, 193
BsgI GTGCAG 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 269
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 210, 260
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 210, 260
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 130, 253
BssMI GATC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 73, 264
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 269
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 2 cut(s) 73, 264
CfoI GCGC 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 31, 274
ClaI ATCGAT 1 cut(s) 269
CviAII CATG 1 cut(s) 280
CviJI RGCY 4 cut(s) 103, 145, 193, 224
CviKI_1 RGCY 4 cut(s) 103, 145, 193, 224
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 203
Eam1105I GACNNNNNGTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 31, 274
EcoRI GAATTC 1 cut(s) 135
FaeI CATG 1 cut(s) 283
FaiI YATR 1 cut(s) 281
FaqI GGGAC 2 cut(s) 210, 260
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 301
GsaI CCCAGC 2 cut(s) 19, 197
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 303
HapII CCGG 1 cut(s) 253
HhaI GCGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 4, 126, 310
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 131, 232, 309
Hpy188III TCNNGA 4 cut(s) 8, 45, 140, 219
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 120, 295
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 100, 142
LpnPI CCDG 7 cut(s) 81, 125, 173, 179, 266, 300, 305
LweI GCATC 1 cut(s) 275
MaeII ACGT 1 cut(s) 156
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 56
MluCI AATT 6 cut(s) 52, 83, 135, 182, 201, 214
MlyI GAGTC 2 cut(s) 120, 304
MnlI CCTC 3 cut(s) 106, 125, 167
MseI TTAA 3 cut(s) 26, 159, 316
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 254
NciI CCSGG 1 cut(s) 254
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 276
PleI GAGTC 2 cut(s) 120, 304
PpsI GAGTC 2 cut(s) 120, 304
Psp1406I AACGTT 1 cut(s) 156
PspFI CCCAGC 2 cut(s) 15, 193
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 31, 274
SaqAI TTAA 3 cut(s) 26, 159, 316
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 31, 274
SchI GAGTC 2 cut(s) 120, 304
ScrFI CCNGG 1 cut(s) 254
SetI ASST 6 cut(s) 36, 105, 147, 159, 178, 294
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 2 cut(s) 31, 274
Sse9I AATT 6 cut(s) 52, 83, 135, 182, 201, 214
SsiI CCGC 1 cut(s) 97
StyD4I CCNGG 1 cut(s) 252
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 269
TasI AATT 6 cut(s) 52, 83, 135, 182, 201, 214
Tru1I TTAA 3 cut(s) 26, 159, 316
Tru9I TTAA 3 cut(s) 26, 159, 316
TspGWI ACGGA 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 31, 274
XapI RAATTY 2 cut(s) 83, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.