Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008106.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

787 .. 1562

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008106.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggatggtggctcatccactcatagaatgactcagcgtctcagcctaagctcaaaggtgactcaaaccagagatggcgagtgccgcgagtcatgggagtgttttgtgaaagtgactgaggccttcggctccgggacctcaatctggctgagcagggcccacgagcttcagtttaacaactgcgagagagccaaagaggcccaaatccacgggatcgagaccttgaacttctccttcgccgacgactctttcttcttccttcttccggcgaaaactctcctgcgaccacctcatttcctccaaaaaagaagaactgagggcataatggacattttggtgtcaaaaattgacgtcgtgtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

6.9

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccII	CGCG	1 cut(s)	87
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	144, 265
AgsI	TTSAA	1 cut(s)	226
AhdI	GACNNNNNGTC	1 cut(s)	36
AluBI	AGCT	2 cut(s)	51, 166
AluI	AGCT	2 cut(s)	51, 166
Alw26I	GTCTC	2 cut(s)	44, 212
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	3 cut(s)	120, 156, 198
ApaI	GGGCCC	1 cut(s)	160
AspS9I	GGNCC	4 cut(s)	135, 156, 157, 199
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	161
BccI	CCATC	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	44, 212
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	85
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgT120I	GGNCC	4 cut(s)	135, 156, 157, 199
BmiI	GGNNCC	3 cut(s)	130, 136, 158
BmrFI	CCNGG	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 265
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	10, 14
BseLI	CCNNNNNNNGG	2 cut(s)	144, 265
BseMII	CTCAG	5 cut(s)	47, 55, 108, 140, 306
BseSI	GKGCMC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	122, 158, 200
BsiSI	CCGG	2 cut(s)	132, 266
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	144, 265
BsmAI	GTCTC	2 cut(s)	44, 212
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	122, 158, 200
Bso31I	GGTCTC	1 cut(s)	212
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	3 cut(s)	122, 158, 200
BspCNI	CTCAG	5 cut(s)	46, 54, 109, 141, 307
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	130, 136, 158
BspPI	GGATC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	351
BstDEI	CTNAG	6 cut(s)	33, 41, 47, 117, 149, 315
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	10, 14
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	2 cut(s)	44, 212
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 197
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	122, 158, 200
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	10, 14
Cfr13I	GGNCC	4 cut(s)	135, 156, 157, 199
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	93
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	6 cut(s)	33, 41, 47, 117, 149, 315
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DriI	GACNNNNNGTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	152
EcoO109I	RGGNCCY	2 cut(s)	135, 156
EcoT38I	GRGCYC	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	96
FaiI	YATR	3 cut(s)	24, 94, 323
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	122, 158, 200
HapII	CCGG	2 cut(s)	132, 266
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	96
HinfI	GANTC	4 cut(s)	31, 61, 89, 245
HpaII	CCGG	2 cut(s)	132, 266
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	245, 356
HpyAV	CCTTC	3 cut(s)	133, 244, 269
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 197
HpyF3I	CTNAG	6 cut(s)	33, 41, 47, 117, 149, 315
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	82, 130, 139, 145, 279, 293
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	58, 112
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	4 cut(s)	244, 247, 254, 321
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	4 cut(s)	25, 55, 98, 239
MnlI	CCTC	6 cut(s)	112, 148, 190, 300, 308, 310
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	97, 335
MspI	CCGG	2 cut(s)	132, 266
MspR9I	CCNGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	84, 197
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	3 cut(s)	130, 136, 158
NmuCI	GTSAC	2 cut(s)	58, 112
PceI	AGGCCT	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	4 cut(s)	25, 55, 97, 239
PpsI	GAGTC	4 cut(s)	25, 55, 97, 239
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	130, 136, 158
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	4 cut(s)	135, 156, 157, 199
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	97, 335
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	4 cut(s)	135, 156, 157, 199
SchI	GAGTC	4 cut(s)	25, 55, 98, 239
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	7 cut(s)	53, 60, 140, 168, 224, 292, 354
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	97, 335
Sse9I	AATT	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	85
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	345
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	58, 112
Tsp45I	GTSAC	2 cut(s)	58, 112
VpaK11BI	GGWCC	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.