Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008106.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2893 .. 3973

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008106.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgggttgctttcactccaaaaccgcccacctccactcccccgacgacccctctcctctccccgaagctcagaaacccgacccggctgatggggatcaagctgaggttggggaccaagcgccggcgttcaaagagtacagtctgaacgagctgcggaaggcgacgaatgggttcagctctgaatttatagtttctgagagcggcgaaaaagccccaaatgtagtttacaaagggaagcttgaaagcaatcgccttgttgctgtaaaacgcttctccaagcagtcttggccggacgcccagcagtttgtggctgaggctgcgggagtggggaagttgaggcacaagagattagtgaatctgattggttgctgtgccgagggagatgaacgcctcttggtggctcagtacatgtccaatgatactctttccaagcatctcttccattgtactgccactcttatctcttgctgtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.31

Weight (kDa)

6.29

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	4 cut(s)	24, 154, 201, 320
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	3 cut(s)	137, 407, 448
AfiI	CCNNNNNNNGG	3 cut(s)	89, 121, 397
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	130, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	68, 101, 151, 177, 238
AluI	AGCT	5 cut(s)	68, 101, 151, 177, 238
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	151, 317
ApoI	RAATTY	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	112
BbvCI	CCTCAGC	2 cut(s)	102, 312
BbvI	GCAGC	2 cut(s)	138, 304
BccI	CCATC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	3 cut(s)	152, 202, 318
BlsI	GCNGC	3 cut(s)	153, 203, 319
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	442
Bpu10I	CCTNAGC	2 cut(s)	102, 312
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 121, 397
Bse118I	RCCGGY	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	89, 121, 397
BseMII	CTCAG	5 cut(s)	83, 93, 186, 303, 416
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	138, 304
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	83, 122, 290
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	89, 121, 397
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	4 cut(s)	24, 154, 201, 320
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	5 cut(s)	82, 94, 187, 304, 415
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	5 cut(s)	69, 102, 195, 312, 402
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 317
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	138, 304
BsuRI	GGCC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	3 cut(s)	136, 406, 447
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	3 cut(s)	136, 406, 447
DdeI	CTNAG	5 cut(s)	69, 102, 195, 312, 402
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	112
FaeI	CATG	1 cut(s)	412
FaiI	YATR	2 cut(s)	188, 410
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 422, 454
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	408
FauI	CCCGC	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	152, 202, 318
Fsp4HI	GCNGC	3 cut(s)	152, 202, 318
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	3 cut(s)	152, 202, 318
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	3 cut(s)	83, 122, 290
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	3 cut(s)	83, 122, 290
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	5 cut(s)	72, 144, 181, 196, 360
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	47, 166
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 317
HpyF3I	CTNAG	5 cut(s)	69, 102, 195, 312, 402
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	96, 135, 303, 311
Lsp1109I	GCAGC	2 cut(s)	138, 304
LweI	GCATC	1 cut(s)	442
MalI	GATC	1 cut(s)	96
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	430
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	8 cut(s)	41, 61, 66, 97, 307, 330, 370, 401
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	170
MspI	CCGG	3 cut(s)	83, 122, 290
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	286, 317
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	94
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	113
NmeAIII	GCCGAG	1 cut(s)	400
NspI	RCATGY	1 cut(s)	412
PciI	ACATGT	1 cut(s)	408
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	153, 203, 319
PscI	ACATGT	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	3 cut(s)	137, 407, 448
RsaNI	GTAC	3 cut(s)	136, 406, 447
SatI	GCNGC	3 cut(s)	152, 202, 318
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	33, 70, 103, 108, 153, 179, 240
SfaNI	GCATC	1 cut(s)	442
SgrAI	CRCCGGYG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	4 cut(s)	24, 154, 201, 320
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	1 cut(s)	182
TatI	WGTACW	3 cut(s)	135, 405, 446
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	151, 317
TspDTI	ATGAA	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.