Rmu_sc0008253.1_g000008
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008253.1
N/A
Physical Location & Seq
Reverse (-)
24548 .. 28095
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008253.1_g000008.1.cds

Sequence Viewer

Length: 705 bp
atgagtagcatccacgatgttgttcttgccggtggctctctagaattcccaaggtacgtgatgcaacacctgttgcaaaatatgttcatagggaaggacatctgcaatggatttaaccctgatgaggttgtcgaatgtggcgcttctgttcaagctgtcgtcttgggtagtagtggtgggaacataaacgaaaaaattcaagacttcactctctccgatgtcacaccaatgtcagtcgggatggagagcaggaaaggggccggtgttcctagcttcaaagttcgctttgagattgatgccaatggtatcctcagcgtctccgctgaggaaaaatccaccggtaggaaacaaagaattacaatcaccagtagtgaacaagaaacaaagacggaggtcccaaatccagacccttggagagatcaggcccagccaatgggctttgaatcgggcccgaaaacagcccaacaatttgactcccttttttacttggacacccatcgggaaggaacccagtcacaaccacccatctccattgtcgtgactgtgtcaccgacacagtctgcaactcaggcgtcgtctcgatgcagcgcaaccaccacaaccaccgactcaggattcaactgctgccttggaacactgctagcaatcccaacaaaggcataccataatataaggagtaaggttctaaaaaacgctaggcgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

234

Amino Acids

25.32

Weight (kDa)

6.1

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AciI CCGC 1 cut(s) 321
AcsI RAATTY 2 cut(s) 44, 195
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 4 cut(s) 124, 342, 433, 655
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 152, 200, 277, 443, 619
AluBI AGCT 2 cut(s) 155, 273
AluI AGCT 2 cut(s) 155, 273
Alw26I GTCTC 2 cut(s) 322, 582
AoxI GGCC 3 cut(s) 258, 423, 448
ApaI GGGCCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 585, 624
ApoI RAATTY 2 cut(s) 44, 195
AsiGI ACCGGT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 3 cut(s) 143, 590, 702
AspS9I GGNCC 5 cut(s) 258, 394, 424, 448, 449
AsuHPI GGTGA 2 cut(s) 355, 540
AsuNHI GCTAGC 1 cut(s) 640
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 452
BbvCI CCTCAGC 2 cut(s) 311, 324
BbvI GCAGC 2 cut(s) 597, 611
BccI CCATC 3 cut(s) 235, 504, 533
BciVI GTATCC 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 322, 582
BfaI CTAG 5 cut(s) 41, 270, 641, 696, 703
BfoI RGCGCY 2 cut(s) 144, 703
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 2 cut(s) 586, 625
BlsI GCNGC 2 cut(s) 587, 626
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 5 cut(s) 258, 394, 424, 448, 449
BmiI GGNNCC 4 cut(s) 259, 396, 450, 508
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 4 cut(s) 18, 51, 286, 572
BmtI GCTAGC 1 cut(s) 644
BmuI ACTGGG 1 cut(s) 505
BoxI GACNNNNGTC 1 cut(s) 392
Bpu10I CCTNAGC 2 cut(s) 311, 324
BsaAI YACGTR 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 50, 410, 628
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 342, 433, 655
Bse118I RCCGGY 3 cut(s) 29, 260, 338
Bse1I ACTGG 2 cut(s) 366, 511
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 50, 410, 628
BseGI GGATG 2 cut(s) 9, 246
BseLI CCNNNNNNNGG 4 cut(s) 124, 342, 433, 655
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 4 cut(s) 315, 325, 581, 624
BseNI ACTGG 2 cut(s) 366, 511
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 2 cut(s) 597, 611
BseYI CCCAGC 1 cut(s) 426
BshFI GGCC 3 cut(s) 260, 425, 450
BshTI ACCGGT 1 cut(s) 338
BsiSI CCGG 3 cut(s) 30, 261, 339
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 4 cut(s) 124, 342, 433, 655
BsmAI GTCTC 2 cut(s) 322, 582
BsmBI CGTCTC 2 cut(s) 322, 582
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 3 cut(s) 260, 425, 450
Bsp120I GGGCCC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 1 cut(s) 321
BspANI GGCC 3 cut(s) 260, 425, 450
BspCNI CTCAG 4 cut(s) 316, 324, 580, 623
BspLI GGNNCC 4 cut(s) 259, 396, 450, 508
BspOI GCTAGC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 3 cut(s) 29, 260, 338
BsrI ACTGG 2 cut(s) 366, 511
BssAI RCCGGY 3 cut(s) 29, 260, 338
BssECI CCNNGG 3 cut(s) 50, 410, 628
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 572
BssT1I CCWWGG 3 cut(s) 50, 410, 628
Bst4CI ACNGT 2 cut(s) 544, 558
BstACI GRCGYC 1 cut(s) 572
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 4 cut(s) 311, 324, 567, 610
BstF5I GGATG 2 cut(s) 9, 246
BstH2I RGCGCY 2 cut(s) 144, 703
BstHHI GCGC 3 cut(s) 143, 590, 702
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 322, 582
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 597, 611
BstXI CCANNNNNNTGG 1 cut(s) 411
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 3 cut(s) 260, 425, 450
BtsCI GGATG 2 cut(s) 9, 246
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 1 cut(s) 635
Cac8I GCNNGC 1 cut(s) 642
CfoI GCGC 3 cut(s) 143, 590, 702
Cfr10I RCCGGY 3 cut(s) 29, 260, 338
Cfr13I GGNCC 5 cut(s) 258, 394, 424, 448, 449
CseI GACGC 2 cut(s) 304, 561
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 338
CviJI RGCY 9 cut(s) 36, 155, 260, 273, 425, 430, 438, 450, 461
CviKI_1 RGCY 9 cut(s) 36, 155, 260, 273, 425, 430, 438, 450, 461
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 4 cut(s) 311, 324, 567, 610
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Eco130I CCWWGG 3 cut(s) 50, 410, 628
Eco24I GRGCYC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 44
EcoT14I CCWWGG 3 cut(s) 50, 410, 628
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 3 cut(s) 50, 410, 628
Esp3I CGTCTC 2 cut(s) 322, 582
FaiI YATR 6 cut(s) 83, 89, 185, 661, 666, 671
FaqI GGGAC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 586, 625
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 586, 625
FspBI CTAG 5 cut(s) 41, 270, 641, 696, 703
GlaI GCGC 3 cut(s) 142, 589, 701
GluI GCNGC 2 cut(s) 586, 625
GsaI CCCAGC 1 cut(s) 430
HaeII RGCGCY 2 cut(s) 144, 703
HaeIII GGCC 3 cut(s) 260, 425, 450
HapII CCGG 3 cut(s) 30, 261, 339
HgaI GACGC 2 cut(s) 304, 561
HhaI GCGC 3 cut(s) 143, 590, 702
Hin1I GRCGYC 1 cut(s) 572
Hin6I GCGC 3 cut(s) 141, 588, 700
HinP1I GCGC 3 cut(s) 141, 588, 700
HinfI GANTC 4 cut(s) 443, 473, 608, 615
HpaII CCGG 3 cut(s) 30, 261, 339
HphI GGTGA 2 cut(s) 355, 540
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 8 cut(s) 41, 200, 238, 404, 500, 538, 579, 612
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 577
HpyAV CCTTC 2 cut(s) 88, 497
HpyCH4III ACNGT 2 cut(s) 544, 558
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 5 cut(s) 64, 76, 105, 563, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 4 cut(s) 311, 324, 567, 610
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 572
HspAI GCGC 3 cut(s) 141, 588, 700
Kzo9I GATC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 597, 611
LweI GCATC 4 cut(s) 18, 51, 286, 572
MaeI CTAG 5 cut(s) 41, 270, 641, 696, 703
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 4 cut(s) 220, 513, 538, 546
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 4 cut(s) 44, 195, 354, 467
MlyI GAGTC 2 cut(s) 467, 602
MnlI CCTC 4 cut(s) 118, 319, 320, 385
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 2 cut(s) 227, 536
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 3 cut(s) 30, 261, 339
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeII GATC 1 cut(s) 418
NheI GCTAGC 1 cut(s) 640
NlaIV GGNNCC 4 cut(s) 259, 396, 450, 508
NmuCI GTSAC 4 cut(s) 220, 513, 538, 546
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 443, 615
PflFI GACNNNGTC 2 cut(s) 544, 556
PflMI CCANNNNNTGG 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 2 cut(s) 587, 626
PleI GAGTC 2 cut(s) 467, 602
PpsI GAGTC 2 cut(s) 467, 602
Ppu21I YACGTR 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 426
PspN4I GGNNCC 4 cut(s) 259, 396, 450, 508
PspOMI GGGCCC 1 cut(s) 448
PspPI GGNCC 5 cut(s) 258, 394, 424, 448, 449
PspPPI RGGWCCY 1 cut(s) 394
PsyI GACNNNGTC 2 cut(s) 544, 556
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 227, 536
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 586, 625
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 5 cut(s) 258, 394, 424, 448, 449
SchI GAGTC 2 cut(s) 467, 602
SduI GDGCHC 1 cut(s) 452
SetI ASST 8 cut(s) 56, 60, 72, 129, 157, 275, 396, 684
SfaNI GCATC 4 cut(s) 18, 51, 286, 572
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 2 cut(s) 227, 536
Sse9I AATT 4 cut(s) 44, 195, 354, 467
SsiI CCGC 1 cut(s) 321
SspMI CTAG 5 cut(s) 41, 270, 641, 696, 703
StyI CCWWGG 3 cut(s) 50, 410, 628
TaaI ACNGT 2 cut(s) 544, 558
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 132, 580
TasI AATT 4 cut(s) 44, 195, 354, 467
TfiI GAWTC 2 cut(s) 443, 615
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 4 cut(s) 220, 513, 538, 546
TseI GCWGC 2 cut(s) 585, 624
Tsp45I GTSAC 4 cut(s) 220, 513, 538, 546
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 642
Tth111I GACNNNGTC 2 cut(s) 544, 556
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 2 cut(s) 44, 195
XbaI TCTAGA 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 5 cut(s) 41, 270, 641, 696, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.