Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008973.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13227 .. 19982

Gene Structure 6756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008973.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgtcgagtcaccggaaccctcaaggcaacaccaataggcaagccagaggaagcaagggtttcgccaaaacccaaaaggtcttcgtccccaaaaatcaaggccagaatcgtcccagaagccctcaatccccaaatcccacgctctctgcctctcttcggcaatcgctatcccagccgtccaatgccgaagtttcaagtgcttctgcttctacgccgtcggagagtagtagtagtagtagggttcggatgggagagagaggtggtgtgatttccatcatcctggatccaaggacatgtggcaggggtcattgtaggggaattagaactaagccgctgtgtttttatggtattgtatcgaatttgagggaaaaaaaaaaggagtttgtgaggtccttgttgaaaaaattcaagtccaaagagaaggtgaagtcttcaaagagtagggatacaagaggtaatgggaaagaggcgtcaaaaggaccaacagcaacggaagaagtaccttcaaatgtaaccaagcagaaggttgcagctgcaaagcagtatatagagaatcattacaagaagcaaatgaaaagtttgcaggagaagaagaagcgccagcagctaactgaggtagcctgtaaccagctggggcagattgaggcactgagccactattcaccacctatcgtggtagacgtatctgccagatggagtgctgttcttgaaagggaagatcacaatatggctactgagtttatggtgaaggacgtgcagttaattcgggcaaaggttgatcacctcattggcaaacatcatctctttaaacgtagtatcatactgattaaggcatgctgctattgtgaaaggagagtgatcctaagggaccacagtatgcaaacaacacttcaaaacttgaatatgatctctcaagtcagtggagatcgctcattcacatggaggatatcttcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

318

Amino Acids

35.69

Weight (kDa)

10.34

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	678
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	3 cut(s)	278, 291, 853
AcsI	RAATTY	2 cut(s)	358, 404
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	8 cut(s)	195, 400, 409, 435, 507, 710, 893, 901
AjiI	CACGTC	1 cut(s)	754
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	3 cut(s)	533, 607, 631
AluI	AGCT	3 cut(s)	533, 607, 631
AlwI	GGATC	3 cut(s)	278, 291, 853
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	530, 533, 604, 837
ApoI	RAATTY	2 cut(s)	358, 404
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	3 cut(s)	390, 479, 868
AsuHPI	GGTGA	4 cut(s)	436, 654, 757, 773
AvaII	GGWCC	3 cut(s)	390, 479, 868
AxyI	CCTNAGG	1 cut(s)	863
BamHI	GGATCC	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	73, 423
BbvI	GCAGC	4 cut(s)	520, 542, 616, 824
BccI	CCATC	3 cut(s)	241, 281, 687
BceAI	ACGGC	2 cut(s)	160, 199
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 746, 780
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	778
BfoI	RGCGCY	1 cut(s)	601
BfuI	GTATCC	1 cut(s)	439
BisI	GCNGC	5 cut(s)	332, 531, 534, 605, 838
BlsI	GCNGC	5 cut(s)	333, 532, 535, 606, 839
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	3 cut(s)	390, 479, 868
BmgBI	CACGTC	1 cut(s)	754
BmgT120I	GGNCC	3 cut(s)	390, 479, 868
BmiI	GGNNCC	3 cut(s)	17, 285, 869
BmrFI	CCNGG	1 cut(s)	281
BpiI	GAAGAC	2 cut(s)	73, 423
BpuEI	CTTGAG	2 cut(s)	6, 897
BsaBI	GATNNNNATC	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	863
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	252, 276
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	3 cut(s)	603, 641, 726
BseXI	GCAGC	4 cut(s)	520, 542, 616, 824
BseYI	CCCAGC	2 cut(s)	171, 631
BsgI	GTGCAG	1 cut(s)	776
BshFI	GGCC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	3 cut(s)	71, 96, 881
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	3 cut(s)	71, 96, 881
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	604, 642, 727
BspLI	GGNNCC	3 cut(s)	17, 285, 869
BspPI	GGATC	3 cut(s)	278, 291, 853
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	875
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	42, 602, 835
BstDEI	CTNAG	5 cut(s)	327, 612, 650, 735, 863
BstF5I	GGATG	2 cut(s)	252, 276
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	6 cut(s)	286, 721, 781, 861, 909, 928
BstMBI	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 604
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	297, 837
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	520, 542, 616, 824
BstV2I	GAAGAC	2 cut(s)	73, 423
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	863
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	754
BtsCI	GGATG	2 cut(s)	252, 276
BtsIMutI	CAGTG	2 cut(s)	647, 925
Cac8I	GCNNGC	3 cut(s)	42, 602, 835
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	390, 479, 868
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	3 cut(s)	294, 834, 939
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	327, 612, 650, 735, 863
DpnI	GATC	6 cut(s)	285, 720, 780, 860, 908, 927
DpnII	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
DraI	TTTAAA	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	948
Eco47I	GGWCC	3 cut(s)	390, 479, 868
Eco81I	CCTNAGG	1 cut(s)	863
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	3 cut(s)	297, 837, 942
FaqI	GGGAC	3 cut(s)	71, 96, 881
FatI	CATG	3 cut(s)	293, 833, 938
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	5 cut(s)	332, 531, 534, 605, 838
FokI	GGATG	2 cut(s)	259, 263
Fsp4HI	GCNGC	5 cut(s)	332, 531, 534, 605, 838
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	5 cut(s)	332, 531, 534, 605, 838
GsaI	CCCAGC	2 cut(s)	175, 635
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	3 cut(s)	297, 837, 942
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	7, 106, 553
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	4 cut(s)	436, 654, 757, 773
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	2 cut(s)	220, 246
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	4 cut(s)	415, 513, 517, 742
HpyCH4III	ACNGT	1 cut(s)	875
HpyCH4IV	ACGT	3 cut(s)	681, 753, 811
HpyCH4V	TGCA	5 cut(s)	530, 536, 583, 757, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 604
HpyF3I	CTNAG	5 cut(s)	327, 612, 650, 735, 863
HpySE526I	ACGT	3 cut(s)	681, 753, 811
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	297, 837, 942
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
Lsp1109I	GCAGC	4 cut(s)	520, 542, 616, 824
MaeII	ACGT	3 cut(s)	681, 753, 811
MaeIII	GTNAC	3 cut(s)	8, 511, 623
MalI	GATC	6 cut(s)	285, 720, 780, 860, 908, 927
MboI	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
MboII	GAAGA	8 cut(s)	73, 146, 423, 506, 601, 604, 728, 942
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	4 cut(s)	318, 358, 404, 762
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	3 cut(s)	761, 807, 828
MslI	CAYNNNNRTG	1 cut(s)	937
MspA1I	CMGCKG	3 cut(s)	334, 533, 631
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	172, 604
NdeII	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
NlaIII	CATG	3 cut(s)	297, 837, 942
NlaIV	GGNNCC	3 cut(s)	17, 285, 869
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	2 cut(s)	297, 837
PaeI	GCATGC	1 cut(s)	837
PciI	ACATGT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	106, 553
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	5 cut(s)	333, 532, 535, 606, 839
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	390
PscI	ACATGT	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	279
PspFI	CCCAGC	2 cut(s)	171, 631
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	17, 285, 869
PspPI	GGNCC	3 cut(s)	390, 479, 868
PspPPI	RGGWCCY	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	533, 631
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	937
SaqAI	TTAA	3 cut(s)	761, 807, 828
SatI	GCNGC	5 cut(s)	332, 531, 534, 605, 838
Sau3AI	GATC	6 cut(s)	283, 718, 778, 858, 906, 925
Sau96I	GGNCC	3 cut(s)	390, 479, 868
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	281
SinI	GGWCC	3 cut(s)	390, 479, 868
SmiMI	CAYNNNNRTG	1 cut(s)	937
SmlI	CTYRAG	2 cut(s)	21, 912
SmoI	CTYRAG	2 cut(s)	21, 912
SphI	GCATGC	1 cut(s)	837
Sse9I	AATT	4 cut(s)	318, 358, 404, 762
SsiI	CCGC	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	875
TaiI	ACGT	3 cut(s)	684, 756, 814
TaqI	TCGA	2 cut(s)	5, 356
TasI	AATT	4 cut(s)	318, 358, 404, 762
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	106, 553
Tru1I	TTAA	3 cut(s)	761, 807, 828
Tru9I	TTAA	3 cut(s)	761, 807, 828
TscAI	CASTG	2 cut(s)	654, 925
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	4 cut(s)	530, 533, 604, 837
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	587
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	2 cut(s)	654, 925
VpaK11BI	GGWCC	3 cut(s)	390, 479, 868
XapI	RAATTY	2 cut(s)	358, 404
XceI	RCATGY	2 cut(s)	297, 837
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.