Rmu_sc0009114.1_g000003

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009114.1
N/A
Physical Location & Seq
Reverse (-)
4134 .. 6863
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009114.1_g000003.1.cds

Sequence Viewer

Length: 693 bp
atggttttgttcagggcaccagtaatccaattgctcaaatcagatgtgttcttaaagaagacattgaagttaagcaacgaggacatcattggctctggagagtatgggacaatttatatacttacacaggatgacaccatggcctttgctgtgaaaagattgaacagaggaagtgcagatagagatcgaagatttgagaagaaaattgaagcaatgggggatataaagcagcggaacatcgtgactcttaatggatattacactgctccacattataaccttcttatatacgaactggtagcttatgaaggcttggatggattgcttcatggtgtggcgggtctccggccgacctccaacccactttcagcgaactccagccgacctccggccaacttccggcgaccacaaaagatactatcactaacaccaaaagctacagtggctagcaataaaagctacactgatgagattgtcggcaacctctggcgaggtcacatccggtcaactcaggcgggtctccggccgacctccaacccactttcggcgaacttcagccgatctccggccaacttccggcgaccacaaaagctactatcactaacaccaaaagcaacaacggctagcaacaaaagctacactgatgagattgtcggcaacctccggcgaggtcacaaaagctactatcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

25.75

Weight (kDa)

10.12

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 3 cut(s) 232, 338, 515
AcoI YGGCCR 4 cut(s) 347, 390, 524, 567
AcuI CTGAAG 1 cut(s) 538
AfiI CCNNNNNNNGG 5 cut(s) 388, 399, 544, 565, 576
AgsI TTSAA 3 cut(s) 67, 163, 209
AluBI AGCT 6 cut(s) 302, 437, 459, 592, 636, 681
AluI AGCT 6 cut(s) 302, 437, 459, 592, 636, 681
Alw26I GTCTC 2 cut(s) 347, 524
AoxI GGCC 5 cut(s) 141, 347, 390, 524, 567
ApeKI GCWGC 1 cut(s) 229
AsuNHI GCTAGC 2 cut(s) 446, 623
BaeGI GKGCMC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 347, 524
BfaI CTAG 3 cut(s) 447, 624, 691
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 18
BmtI GCTAGC 2 cut(s) 450, 627
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 2 cut(s) 117, 361
BsaBI GATNNNNATC 1 cut(s) 183
BsaI GGTCTC 2 cut(s) 347, 524
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 5 cut(s) 388, 399, 544, 565, 576
Bse1I ACTGG 2 cut(s) 20, 300
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 136, 322, 498
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 5 cut(s) 388, 399, 544, 565, 576
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 2 cut(s) 20, 300
BseSI GKGCMC 1 cut(s) 19
BseX3I CGGCCG 2 cut(s) 347, 524
BseXI GCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 195
Bsh1285I CGRYCG 2 cut(s) 350, 527
BshFI GGCC 5 cut(s) 143, 349, 392, 526, 569
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 2 cut(s) 350, 527
BsiSI CCGG 8 cut(s) 346, 389, 400, 502, 523, 566, 577, 664
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 5 cut(s) 388, 399, 544, 565, 576
BsmAI GTCTC 2 cut(s) 347, 524
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 5 cut(s) 143, 349, 392, 526, 569
Bso31I GGTCTC 2 cut(s) 347, 524
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 184, 560
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 3 cut(s) 232, 338, 515
BspANI GGCC 5 cut(s) 143, 349, 392, 526, 569
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 18
BspOI GCTAGC 2 cut(s) 450, 627
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 2 cut(s) 347, 524
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 2 cut(s) 20, 300
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 184, 560
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 448, 625
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 136, 322, 498
BstKTI GATC 2 cut(s) 187, 563
BstMAI GTCTC 2 cut(s) 347, 524
BstMBI GATC 2 cut(s) 184, 560
BstMCI CGRYCG 2 cut(s) 350, 527
BstMWI GCNNNNNNNGC 4 cut(s) 443, 456, 620, 633
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 65
BstZI CGGCCG 2 cut(s) 347, 524
BsuRI GGCC 5 cut(s) 143, 349, 392, 526, 569
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 136, 322, 498
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 4 cut(s) 261, 447, 462, 639
Cac8I GCNNGC 2 cut(s) 448, 625
CviAII CATG 2 cut(s) 139, 329
DdeI CTNAG 1 cut(s) 510
DpnI GATC 2 cut(s) 186, 562
DpnII GATC 2 cut(s) 184, 560
EaeI YGGCCR 4 cut(s) 347, 390, 524, 567
EagI CGGCCG 2 cut(s) 347, 524
EclXI CGGCCG 2 cut(s) 347, 524
Eco130I CCWWGG 1 cut(s) 138
Eco31I GGTCTC 2 cut(s) 347, 524
Eco52I CGGCCG 2 cut(s) 347, 524
Eco57I CTGAAG 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 142, 332
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 138, 328
FauI CCCGC 2 cut(s) 331, 508
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 3 cut(s) 143, 329, 485
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 3 cut(s) 447, 624, 691
GluI GCNGC 1 cut(s) 230
GsuI CTGGAG 2 cut(s) 117, 361
HaeIII GGCC 5 cut(s) 143, 349, 392, 526, 569
HapII CCGG 8 cut(s) 346, 389, 400, 502, 523, 566, 577, 664
Hin1II CATG 2 cut(s) 142, 332
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 1 cut(s) 244
HpaII CCGG 8 cut(s) 346, 389, 400, 502, 523, 566, 577, 664
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 96, 241
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 2 cut(s) 290, 302
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 456, 620, 633
HpyF3I CTNAG 1 cut(s) 510
Hsp92II CATG 2 cut(s) 142, 332
Kzo9I GATC 2 cut(s) 184, 560
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 1 cut(s) 241
MaeI CTAG 3 cut(s) 447, 624, 691
MaeIII GTNAC 3 cut(s) 241, 494, 671
MalI GATC 2 cut(s) 186, 562
MboI GATC 2 cut(s) 184, 560
MboII GAAGA 3 cut(s) 70, 201, 211
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 3 cut(s) 29, 111, 204
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 2 cut(s) 381, 558
MnlI CCTC 9 cut(s) 73, 161, 364, 396, 485, 494, 541, 662, 671
MseI TTAA 3 cut(s) 53, 71, 249
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 8 cut(s) 346, 389, 400, 502, 523, 566, 577, 664
MunI CAATTG 1 cut(s) 29
MwoI GCNNNNNNNGC 4 cut(s) 443, 456, 620, 633
NcoI CCATGG 1 cut(s) 138
NdeII GATC 2 cut(s) 184, 560
NheI GCTAGC 2 cut(s) 446, 623
NlaIII CATG 2 cut(s) 142, 332
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 3 cut(s) 241, 494, 671
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PsiI TTATAA 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 53, 71, 249
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 2 cut(s) 184, 560
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 438
Sse9I AATT 3 cut(s) 29, 111, 204
SsiI CCGC 3 cut(s) 232, 338, 515
SspMI CTAG 3 cut(s) 447, 624, 691
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 187
TasI AATT 3 cut(s) 29, 111, 204
Tru1I TTAA 3 cut(s) 53, 71, 249
Tru9I TTAA 3 cut(s) 53, 71, 249
TscAI CASTG 4 cut(s) 268, 447, 469, 646
TseFI GTSAC 3 cut(s) 241, 494, 671
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 3 cut(s) 241, 494, 671
TspDTI ATGAA 2 cut(s) 317, 321
TspRI CASTG 4 cut(s) 268, 447, 469, 646
XspI CTAG 3 cut(s) 447, 624, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.