Rmu_sc0009775.1_g000002
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009775.1
N/A
Physical Location & Seq
Forward (+)
5042 .. 5341
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009775.1_g000002.1.cds

Sequence Viewer

Length: 300 bp
atgcttgaaatgttgtctggaagacgagctgtggacaagaaccggcctacaggagaacacagcttagttgagtgggccaaaccttaccttgcctgcaaacgcagagttctccaagttcttgatcctcctattgatgggcagtactctgtggctgcagatcttaaagcagttaaccttgcaattcgatgcttatcaacagaactcaagtttaggccaatcatgcatgaatatgtggtaaaagcattagagcagcttcaggaacctggaagacatggatggtcccggaccctctcaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.31

Weight (kDa)

9.51

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 3 cut(s) 29, 63, 253
AluI AGCT 3 cut(s) 29, 63, 253
AlwI GGATC 1 cut(s) 116
AoxI GGCC 3 cut(s) 44, 75, 212
ApeKI GCWGC 2 cut(s) 152, 250
AspS9I GGNCC 3 cut(s) 75, 279, 285
AsuC2I CCSGG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 279, 285
BbsI GAAGAC 2 cut(s) 28, 274
BbvI GCAGC 2 cut(s) 139, 262
BccI CCATC 2 cut(s) 128, 270
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 1 cut(s) 283
BfmI CTRYAG 2 cut(s) 48, 153
BglII AGATCT 1 cut(s) 157
BisI GCNGC 2 cut(s) 153, 251
BlsI GCNGC 2 cut(s) 154, 252
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 264, 283
Bme18I GGWCC 2 cut(s) 279, 285
BmgT120I GGNCC 3 cut(s) 75, 279, 285
BmiI GGNNCC 3 cut(s) 261, 281, 287
BmrFI CCNGG 2 cut(s) 264, 283
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 28, 274
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 139, 262
BshFI GGCC 3 cut(s) 46, 77, 214
BsiSI CCGG 2 cut(s) 43, 283
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 3 cut(s) 46, 77, 214
Bsp143I GATC 2 cut(s) 121, 157
BspANI GGCC 3 cut(s) 46, 77, 214
BspLI GGNNCC 3 cut(s) 261, 281, 287
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 2 cut(s) 121, 157
Bst2UI CCWGG 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 2 cut(s) 124, 160
BstMBI GATC 2 cut(s) 121, 157
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 262, 281
BstSFI CTRYAG 2 cut(s) 48, 153
BstV1I GCAGC 2 cut(s) 139, 262
BstV2I GAAGAC 2 cut(s) 28, 274
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 3 cut(s) 46, 77, 214
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 75, 279, 285
Csp6I GTAC 1 cut(s) 142
CviAII CATG 3 cut(s) 220, 224, 272
CviJI RGCY 7 cut(s) 29, 46, 63, 77, 152, 214, 253
CviKI_1 RGCY 7 cut(s) 29, 46, 63, 77, 152, 214, 253
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 64
DpnI GATC 2 cut(s) 123, 159
DpnII GATC 2 cut(s) 121, 157
Eco47I GGWCC 2 cut(s) 279, 285
Eco57I CTGAAG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 3 cut(s) 223, 227, 275
FaiI YATR 4 cut(s) 221, 225, 231, 273
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 219, 223, 271
Fnu4HI GCNGC 2 cut(s) 153, 251
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 153, 251
GluI GCNGC 2 cut(s) 153, 251
HaeIII GGCC 3 cut(s) 46, 77, 214
HapII CCGG 2 cut(s) 43, 283
Hin1II CATG 3 cut(s) 223, 227, 275
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 2 cut(s) 43, 283
Hpy166II GTNNAC 2 cut(s) 34, 172
Hpy188III TCNNGA 3 cut(s) 18, 119, 257
Hpy8I GTNNAC 2 cut(s) 34, 172
HpyCH4V TGCA 4 cut(s) 96, 155, 179, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 3 cut(s) 223, 227, 275
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 121, 157
LpnPI CCDG 8 cut(s) 3, 36, 56, 106, 242, 249, 276, 296
Lsp1109I GCAGC 2 cut(s) 139, 262
LweI GCATC 1 cut(s) 176
MalI GATC 2 cut(s) 123, 159
MboI GATC 2 cut(s) 121, 157
MboII GAAGA 2 cut(s) 33, 279
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 180
MnlI CCTC 2 cut(s) 135, 299
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 2 cut(s) 162, 171
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 2 cut(s) 43, 283
MspR9I CCNGG 2 cut(s) 264, 283
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 283
NdeII GATC 2 cut(s) 121, 157
NlaIII CATG 3 cut(s) 223, 227, 275
NlaIV GGNNCC 3 cut(s) 261, 281, 287
NsiI ATGCAT 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 2 cut(s) 154, 252
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 261, 281, 287
PspPI GGNCC 3 cut(s) 75, 279, 285
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 162, 171
SatI GCNGC 2 cut(s) 153, 251
Sau3AI GATC 2 cut(s) 121, 157
Sau96I GGNCC 3 cut(s) 75, 279, 285
ScaI AGTACT 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 264, 283
SetI ASST 7 cut(s) 31, 65, 85, 90, 177, 255, 265
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 2 cut(s) 48, 153
SinI GGWCC 2 cut(s) 279, 285
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 262, 281
TaqI TCGA 1 cut(s) 184
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 141
Tru1I TTAA 2 cut(s) 162, 171
Tru9I TTAA 2 cut(s) 162, 171
TseI GCWGC 2 cut(s) 152, 250
TspDTI ATGAA 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 279, 285
ZrmI AGTACT 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.