Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010019.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12005 .. 12568

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010019.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgccttcgtggtggagaaagtcttcatccaaagaagtaaagaagaaagcaaataaggagagtttcattgataccataatgactatacaccgaaaacttaagagttcttctgaagaaaagtttaacagtagttcagggggttctaggagacgatgtactgacaccgtttcagaaatgggttctcaatccagggctttgtcaccattaacatcgacacaagtatcacgctgtcaaagttttgcagagaggcctcatgcccaaccactacctcttcctagagtgcaactttccaacattgggcgttctgactctgctgtaacggcatcatcaaaaaccgggtctgatacagggcccaagcaattgctctatgtgcccctttcaagccctggccgtatcttgagcagggcagtacctgcagatgcggacggtgatatagccactgcttccatatctagtgatagttctattgatagtgatgacccacctgattcacgtctccttagtcccatggcctctgactgcgaatatggcaccagaacaactctgaacagtccttccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009893 GO:0009987 GO:0010016 GO:0010098 GO:0010103 GO:0010229 GO:0010374 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0097435 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

187

Amino Acids

20.15

Weight (kDa)

9.43

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	530
AciI	CCGC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	157, 411
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflII	CTTAAG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	3 cut(s)	188, 385, 557
AloI	GAACNNNNNNTCC	1 cut(s)	539
Alw26I	GTCTC	2 cut(s)	142, 500
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	248, 350, 388, 510
ApaI	GGGCCC	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp700I	GAANNNNTTC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	350, 351
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	192, 440
BaeGI	GKGCMC	2 cut(s)	354, 375
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	15
BceAI	ACGGC	2 cut(s)	336, 375
BciT130I	CCWGG	3 cut(s)	190, 387, 559
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	142, 500
BfaI	CTAG	3 cut(s)	144, 276, 453
BfmI	CTRYAG	1 cut(s)	414
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	421
Bme1390I	CCNGG	4 cut(s)	190, 337, 387, 559
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	350, 351
BmiI	GGNNCC	2 cut(s)	352, 532
BmrFI	CCNGG	4 cut(s)	190, 337, 387, 559
BmsI	GCATC	2 cut(s)	332, 409
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	3 cut(s)	189, 385, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	190, 387, 559
BseDI	CCNNGG	3 cut(s)	189, 385, 507
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseSI	GKGCMC	2 cut(s)	354, 375
BshFI	GGCC	4 cut(s)	250, 352, 390, 512
BshNI	GGYRCC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	142, 500
BsmBI	CGTCTC	2 cut(s)	142, 500
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	4 cut(s)	250, 352, 390, 512
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	354, 375
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	4 cut(s)	250, 352, 390, 512
BspLI	GGNNCC	2 cut(s)	352, 532
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	530
BspTI	CTTAAG	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	189, 385, 507
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	190, 387, 559
Bst4CI	ACNGT	4 cut(s)	128, 166, 428, 551
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	142, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 370, 413, 528
BstNI	CCWGG	3 cut(s)	190, 387, 559
BstSCI	CCNGG	4 cut(s)	188, 335, 385, 557
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	2 cut(s)	354, 375
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	250, 352, 390, 512
BtgI	CCRYGG	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	350, 351
Csp6I	GTAC	2 cut(s)	156, 410
CviAII	CATG	2 cut(s)	254, 508
CviJI	RGCY	7 cut(s)	194, 250, 352, 384, 390, 437, 512
CviKI_1	RGCY	7 cut(s)	194, 250, 352, 384, 390, 437, 512
CviQI	GTAC	2 cut(s)	156, 410
DdeI	CTNAG	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	188, 385, 557
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	2 cut(s)	142, 500
FaeI	CATG	2 cut(s)	257, 511
FaiI	YATR	8 cut(s)	77, 86, 255, 369, 434, 449, 509, 528
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	2 cut(s)	253, 507
FokI	GGATG	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	354
FspBI	CTAG	3 cut(s)	144, 276, 453
HaeIII	GGCC	4 cut(s)	250, 352, 390, 512
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	2 cut(s)	257, 511
HinfI	GANTC	2 cut(s)	308, 488
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	2 cut(s)	192, 440
Hpy188I	TCNGA	6 cut(s)	112, 172, 307, 343, 517, 546
Hpy188III	TCNNGA	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	15, 564
HpyCH4III	ACNGT	4 cut(s)	128, 166, 428, 551
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	242, 283, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 370, 413, 528
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	2 cut(s)	257, 511
LweI	GCATC	2 cut(s)	332, 409
MaeI	CTAG	3 cut(s)	144, 276, 453
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	198, 316
MboII	GAAGA	5 cut(s)	15, 55, 99, 125, 263
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	354, 375
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	4 cut(s)	240, 261, 279, 523
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	3 cut(s)	99, 123, 206
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	4 cut(s)	190, 337, 387, 559
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	3 cut(s)	190, 387, 559
MwoI	GCNNNNNNNGC	4 cut(s)	320, 370, 413, 528
NciI	CCSGG	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	507
NlaIII	CATG	2 cut(s)	257, 511
NlaIV	GGNNCC	2 cut(s)	352, 532
NmuCI	GTSAC	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	488
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	188, 385, 557
PspGI	CCWGG	3 cut(s)	188, 385, 557
PspN4I	GGNNCC	2 cut(s)	352, 532
PspOMI	GGGCCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	350, 351
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	157, 411
RsaNI	GTAC	2 cut(s)	156, 410
SaqAI	TTAA	3 cut(s)	99, 123, 206
Sau96I	GGNCC	2 cut(s)	350, 351
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	190, 337, 387, 559
SduI	GDGCHC	2 cut(s)	354, 375
SetI	ASST	5 cut(s)	271, 415, 487, 496, 563
SfaNI	GCATC	2 cut(s)	332, 409
SfcI	CTRYAG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	98, 397
SmoI	CTYRAG	2 cut(s)	98, 397
Sse9I	AATT	1 cut(s)	359
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	144, 276, 453
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	4 cut(s)	188, 335, 385, 557
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	128, 166, 428, 551
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	359
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	99, 123, 206
Tru9I	TTAA	3 cut(s)	99, 123, 206
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	15, 55
TspRI	CASTG	1 cut(s)	445
Vha464I	CTTAAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	3 cut(s)	144, 276, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.