Rmu_sc0010516.1_g000001
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010516.1
N/A
Physical Location & Seq
Reverse (-)
458 .. 1556
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010516.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
atgactcgaagacctgctgacccggaagaagaactccggtggatgtctcaagaagttagaggttacgttgaagctgttttgaatagtttggcggctaatgtccctaaggcagttgttctttgccaagtcgaaaaagccaaggaagacatgctaaatcagttatatagctctgtcagtgctcaaagcacagcgaagattgaagagctgctccaagaggatggtaatgtaaagagacgaagagagaaataccagaaacagtcctctctcctttccaagctaacacgccaactcagcattcatgacaaccgagcggctgctgcctctggctggtccaatggtggtgcaactgaaagcagcccaaaaacaagtagctcctcaggtgatgactggagatctgcatttgatgctgctgccaacggtccagttgaccgttcattatctagatcttcatccaatggccatagtcgacactatagcgatcccgcacaaaatggtgatgtgagtgctggtccaaactctggcagccgacgtactcctaatcgattgccacctccaccacctgggtcttcagggagcagatacttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

195

Amino Acids

21.16

Weight (kDa)

9.3

Isoelectric Point (pI)

82.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 2 cut(s) 518, 560
AccBSI CCGCTC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 466
AciI CCGC 3 cut(s) 92, 311, 483
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 3 cut(s) 327, 518, 560
AgsI TTSAA 3 cut(s) 71, 82, 200
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 5 cut(s) 74, 168, 205, 277, 372
AluI AGCT 5 cut(s) 74, 168, 205, 277, 372
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 51, 226
AlwI GGATC 1 cut(s) 473
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 7 cut(s) 205, 314, 317, 354, 407, 410, 522
AspS9I GGNCC 3 cut(s) 330, 419, 509
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 392, 506
AvaII GGWCC 3 cut(s) 330, 419, 509
AxyI CCTNAGG 2 cut(s) 105, 376
BalI TGGCCA 1 cut(s) 459
BbsI GAAGAC 3 cut(s) 16, 150, 558
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 7 cut(s) 192, 301, 304, 366, 394, 397, 534
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 51, 226
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 472
BfuAI ACCTGC 1 cut(s) 22
BglII AGATCT 2 cut(s) 392, 443
BisI GCNGC 9 cut(s) 93, 206, 312, 315, 318, 355, 408, 411, 523
BlsI GCNGC 9 cut(s) 94, 207, 313, 316, 319, 356, 409, 412, 524
Bme1390I CCNGG 2 cut(s) 23, 561
Bme18I GGWCC 3 cut(s) 330, 419, 509
BmgT120I GGNCC 3 cut(s) 330, 419, 509
BmrFI CCNGG 2 cut(s) 23, 561
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 3 cut(s) 16, 150, 558
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 138, 560
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 518, 560
Bse1I ACTGG 2 cut(s) 392, 422
Bse21I CCTNAGG 2 cut(s) 105, 376
Bse8I GATNNNNATC 1 cut(s) 448
BseBI CCWGG 1 cut(s) 561
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 2 cut(s) 138, 560
BseGI GGATG 3 cut(s) 48, 223, 449
BseJI GATNNNNATC 1 cut(s) 448
BseLI CCNNNNNNNGG 3 cut(s) 327, 518, 560
BseMII CTCAG 2 cut(s) 304, 390
BseNI ACTGG 2 cut(s) 392, 422
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 7 cut(s) 192, 301, 304, 366, 394, 397, 534
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 23, 37
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 327, 518, 560
BsmAI GTCTC 2 cut(s) 51, 226
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 392, 443, 478
BspACI CCGC 3 cut(s) 92, 311, 483
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 2 cut(s) 303, 389
BspDI ATCGAT 1 cut(s) 541
BspHI TCATGA 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 473
BspQI GCTCTTC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 311
BsrI ACTGG 2 cut(s) 392, 422
BssECI CCNNGG 2 cut(s) 138, 560
BssMI GATC 3 cut(s) 392, 443, 478
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 3 cut(s) 258, 419, 431
Bst6I CTCTTC 2 cut(s) 195, 232
BstAPI GCANNNNNTGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 105, 290, 376
BstF5I GGATG 3 cut(s) 48, 223, 449
BstKTI GATC 3 cut(s) 395, 446, 481
BstMAI GTCTC 2 cut(s) 51, 226
BstMBI GATC 3 cut(s) 392, 443, 478
BstMWI GCNNNNNNNGC 3 cut(s) 291, 317, 404
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 21, 559
BstSFI CTRYAG 1 cut(s) 472
BstV1I GCAGC 7 cut(s) 192, 301, 304, 366, 394, 397, 534
BstV2I GAAGAC 3 cut(s) 16, 150, 558
BstX2I RGATCY 2 cut(s) 392, 443
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 2 cut(s) 392, 443
Bsu15I ATCGAT 1 cut(s) 541
Bsu36I CCTNAGG 2 cut(s) 105, 376
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 541
BtsCI GGATG 3 cut(s) 48, 223, 449
BtsIMutI CAGTG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 330, 419, 509
ClaI ATCGAT 1 cut(s) 541
Csp6I GTAC 1 cut(s) 531
CviAII CATG 2 cut(s) 148, 299
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 3 cut(s) 105, 290, 376
DpnI GATC 3 cut(s) 394, 445, 480
DpnII GATC 3 cut(s) 392, 443, 478
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 195, 232
EarI CTCTTC 2 cut(s) 195, 232
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 3 cut(s) 330, 419, 509
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 2 cut(s) 105, 376
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 2 cut(s) 151, 302
FaiI YATR 6 cut(s) 149, 163, 165, 300, 462, 474
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 147, 298
FauI CCCGC 1 cut(s) 490
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 9 cut(s) 93, 206, 312, 315, 318, 355, 408, 411, 523
FokI GGATG 3 cut(s) 55, 230, 436
Fsp4HI GCNGC 9 cut(s) 93, 206, 312, 315, 318, 355, 408, 411, 523
FspBI CTAG 1 cut(s) 441
GluI GCNGC 9 cut(s) 93, 206, 312, 315, 318, 355, 408, 411, 523
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 23, 37
Hin1II CATG 2 cut(s) 151, 302
HincII GTYRAC 2 cut(s) 427, 467
HindII GTYRAC 2 cut(s) 427, 467
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 23, 37
HphI GGTGA 2 cut(s) 392, 506
Hpy166II GTNNAC 2 cut(s) 427, 467
Hpy188III TCNNGA 3 cut(s) 50, 299, 441
Hpy8I GTNNAC 2 cut(s) 427, 467
Hpy99I CGWCG 1 cut(s) 531
HpyCH4III ACNGT 3 cut(s) 258, 419, 431
HpyCH4IV ACGT 2 cut(s) 66, 529
HpyCH4V TGCA 2 cut(s) 344, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 317, 404
HpyF3I CTNAG 3 cut(s) 105, 290, 376
HpySE526I ACGT 2 cut(s) 66, 529
Hsp92II CATG 2 cut(s) 151, 302
Kzo9I GATC 3 cut(s) 392, 443, 478
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 213, 377, 573
Lsp1109I GCAGC 7 cut(s) 192, 301, 304, 366, 394, 397, 534
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 66, 529
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 394, 445, 480
MbiI CCGCTC 1 cut(s) 311
MboI GATC 3 cut(s) 392, 443, 478
MboII GAAGA 9 cut(s) 21, 38, 41, 155, 205, 212, 249, 438, 558
MflI RGATCY 2 cut(s) 392, 443
MhlI GDGCHC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 459
MnlI CCTC 6 cut(s) 53, 208, 271, 331, 385, 561
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 459
MspI CCGG 2 cut(s) 23, 37
MspR9I CCNGG 2 cut(s) 23, 561
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 291, 317, 404
NciI CCSGG 1 cut(s) 23
NdeII GATC 3 cut(s) 392, 443, 478
NlaIII CATG 2 cut(s) 151, 302
NspI RCATGY 1 cut(s) 151
PagI TCATGA 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 195
PctI GAATGC 1 cut(s) 294
PflMI CCANNNNNTGG 2 cut(s) 518, 560
PkrI GCNGC 9 cut(s) 94, 207, 313, 316, 319, 356, 409, 412, 524
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspPI GGNCC 3 cut(s) 330, 419, 509
PsuI RGATCY 2 cut(s) 392, 443
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SalI GTCGAC 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 195
SatI GCNGC 9 cut(s) 93, 206, 312, 315, 318, 355, 408, 411, 523
Sau3AI GATC 3 cut(s) 392, 443, 478
Sau96I GGNCC 3 cut(s) 330, 419, 509
ScrFI CCNGG 2 cut(s) 23, 561
SduI GDGCHC 1 cut(s) 181
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 472
SinI GGWCC 3 cut(s) 330, 419, 509
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SsiI CCGC 3 cut(s) 92, 311, 483
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 21, 559
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 3 cut(s) 258, 419, 431
TaiI ACGT 2 cut(s) 69, 532
TaqI TCGA 4 cut(s) 7, 129, 466, 541
TauI GCSGC 2 cut(s) 95, 314
TscAI CASTG 1 cut(s) 181
TseI GCWGC 7 cut(s) 205, 314, 317, 354, 407, 410, 522
TspDTI ATGAA 3 cut(s) 287, 423, 438
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 2 cut(s) 518, 560
VpaK11BI GGWCC 3 cut(s) 330, 419, 509
XbaI TCTAGA 1 cut(s) 440
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.