Rmu_sc0011181.1_g000001

receptor protein kinase ZmPK1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011181.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 15570
15569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011181.1_g000001.1.cds

Sequence Viewer

Length: 6658 bp
atgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccgtagaaaatccatctcaaactttgatgtctccggacgcagtatttaccgctggcttttttccggtcggtgaaaatgcgttttgctttggaatatggttctcggagccatcaaccattactcacaacctcaccgtggtgtggatagcaaatcgtgacgagccggtcaacggtcaacgctctaagctcaccctgcacaaaagtggaacccttattctctccgacatcgaccgatacaccgtgtggtcctccaacacagcttcaaactcatcggcccacttgcaccttagaaacaccggcaatcttgttctgctcgctgcgcacggcggcggcgtattgtgggaaagctttgcttcgccgacggacacacttttgcctcagcaagcgctcactagaaacacacagctcatttcttcaagaagcctcaccaactattcctccggcttctactctttttacttcgacaacgacaacactcttcgtatgctctacaacggccccgaggtttcgagcatttactggcctgatccatggcttctgagttggcaagtaggaagatccacatacaacaacagtcgaattgcaacttttgacagcttgggaaattttagtgcatctgataattttatcgtttggacaattgactacggtgcaaatttgcagcgaatattcaggatggatgtagatggtaatctcagaggttacagtcgaaaaggtcctggagataaatggattgttacatgggaggcagttttacaaccttgtaaaattcatggcatatgcggagctaatagctattgcagctatattcctagtacaggtaggaaatgctcgtgcctgccgggttatgaaatgatcagtaaaaccgattggtcttatgggtgtaaaccggctggtttcaatctgtcctgcaagagtagtgcacgggaggagtttggttttgtgcatcttccacgtattgagatgtatggttatgattatgccgtctatggcaattacacattagatgagtgcaaaagtttgtgcctggacttgtgcaactgtactgcattccaccacaaatttggtggtggtcagtatcagtgttatcccaaggcgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

2219

Amino Acids

245.83

Weight (kDa)

6.1

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5880
AclWI GGATC 2 cut(s) 6080, 6111
AcsI RAATTY 4 cut(s) 6163, 6214, 6327, 6620
AfaI GTAC 2 cut(s) 6376, 6604
AfeI AGCGCT 1 cut(s) 5946
AjnI CCWGG 2 cut(s) 6277, 6585
Alw21I GWGCWC 1 cut(s) 6484
Alw44I GTGCAC 1 cut(s) 6480
AlwI GGATC 2 cut(s) 6080, 6111
Ama87I CYCGRG 1 cut(s) 6059
Aor51HI AGCGCT 1 cut(s) 5946
ApaLI GTGCAC 1 cut(s) 6480
ApeKI GCWGC 3 cut(s) 5876, 6220, 6360
ApoI RAATTY 4 cut(s) 6163, 6214, 6327, 6620
AspLEI GCGC 3 cut(s) 5881, 5947, 6658
AsuC2I CCSGG 1 cut(s) 6402
AvaI CYCGRG 1 cut(s) 6059
BaeGI GKGCMC 1 cut(s) 6484
BauI CACGAG 1 cut(s) 6391
Bbv12I GWGCWC 1 cut(s) 6484
BbvCI CCTCAGC 1 cut(s) 5937
BbvI GCAGC 3 cut(s) 5863, 6232, 6372
BceAI ACGGC 3 cut(s) 5899, 6070, 6527
BciT130I CCWGG 2 cut(s) 6279, 6587
BclI TGATCA 1 cut(s) 6414
BcnI CCSGG 1 cut(s) 6402
BfaI CTAG 2 cut(s) 5952, 6372
BfoI RGCGCY 1 cut(s) 5948
BisI GCNGC 5 cut(s) 5877, 5887, 5890, 6221, 6361
BlsI GCNGC 5 cut(s) 5878, 5888, 5891, 6222, 6362
Bme1390I CCNGG 3 cut(s) 6279, 6402, 6587
BmeT110I CYCGRG 1 cut(s) 6059
BmrFI CCNGG 3 cut(s) 6279, 6402, 6587
BmsI GCATC 2 cut(s) 6182, 6514
BpmI CTGGAG 1 cut(s) 6300
Bpu10I CCTNAGC 1 cut(s) 5937
BpuMI CCSGG 1 cut(s) 6402
BsaAI YACGTR 1 cut(s) 6515
BsaBI GATNNNNATC 1 cut(s) 6249
BsaXI ACNNNNNCTCC 2 cut(s) 5981, 6011
Bse1I ACTGG 1 cut(s) 6083
Bse8I GATNNNNATC 1 cut(s) 6249
BseBI CCWGG 2 cut(s) 6279, 6587
BseGI GGATG 2 cut(s) 6240, 6244
BseJI GATNNNNATC 1 cut(s) 6249
BseMII CTCAG 3 cut(s) 5951, 6089, 6268
BseNI ACTGG 1 cut(s) 6083
BseRI GAGGAG 1 cut(s) 6503
BseSI GKGCMC 1 cut(s) 6484
BseXI GCAGC 3 cut(s) 5863, 6232, 6372
BsiHKAI GWGCWC 1 cut(s) 6484
BsiHKCI CYCGRG 1 cut(s) 6059
BsmI GAATGC 1 cut(s) 6608
BsoBI CYCGRG 1 cut(s) 6059
Bsp1286I GDGCHC 1 cut(s) 6484
Bsp143I GATC 3 cut(s) 6085, 6116, 6414
Bsp19I CCATGG 1 cut(s) 6089
BspCNI CTCAG 3 cut(s) 5950, 6090, 6267
BspPI GGATC 2 cut(s) 6080, 6111
BsrI ACTGG 1 cut(s) 6083
BssMI GATC 3 cut(s) 6085, 6116, 6414
BssSI CACGAG 1 cut(s) 6391
BssT1I CCWWGG 2 cut(s) 6089, 6651
Bst2BI CACGAG 1 cut(s) 6391
Bst2UI CCWGG 2 cut(s) 6279, 6587
Bst6I CTCTTC 1 cut(s) 6042
BstBAI YACGTR 1 cut(s) 6515
BstENI CCTNNNNNAGG 1 cut(s) 6375
BstF5I GGATG 2 cut(s) 6240, 6244
BstH2I RGCGCY 1 cut(s) 5948
BstHHI GCGC 3 cut(s) 5881, 5947, 6658
BstKTI GATC 3 cut(s) 6088, 6119, 6417
BstMBI GATC 3 cut(s) 6085, 6116, 6414
BstNI CCWGG 2 cut(s) 6279, 6587
BstSCI CCNGG 3 cut(s) 6277, 6400, 6585
BstSLI GKGCMC 1 cut(s) 6484
BstV1I GCAGC 3 cut(s) 5863, 6232, 6372
BstX2I RGATCY 1 cut(s) 6116
BstXI CCANNNNNNTGG 1 cut(s) 6623
BstYI RGATCY 1 cut(s) 6116
BtsCI GGATG 2 cut(s) 6240, 6244
BtsIMutI CAGTG 1 cut(s) 6647
CfoI GCGC 3 cut(s) 5881, 5947, 6658
Csp6I GTAC 2 cut(s) 6375, 6603
CspCI CAANNNNNGTGG 2 cut(s) 6607, 6642
CviAII CATG 3 cut(s) 6090, 6300, 6332
CviQI GTAC 2 cut(s) 6375, 6603
DpnI GATC 3 cut(s) 6087, 6118, 6416
DpnII GATC 3 cut(s) 6085, 6116, 6414
Eam1104I CTCTTC 1 cut(s) 6042
EarI CTCTTC 1 cut(s) 6042
Eco130I CCWWGG 2 cut(s) 6089, 6651
Eco47III AGCGCT 1 cut(s) 5946
Eco88I CYCGRG 1 cut(s) 6059
EcoNI CCTNNNNNAGG 1 cut(s) 6375
EcoO109I RGGNCCY 1 cut(s) 6275
EcoRII CCWGG 2 cut(s) 6277, 6585
EcoT14I CCWWGG 2 cut(s) 6089, 6651
ErhI CCWWGG 2 cut(s) 6089, 6651
FaeI CATG 3 cut(s) 6093, 6303, 6335
FalI AAGNNNNNCTT 2 cut(s) 5896, 5928
FatI CATG 3 cut(s) 6089, 6299, 6331
FauNDI CATATG 1 cut(s) 6338
FbaI TGATCA 1 cut(s) 6414
Fnu4HI GCNGC 5 cut(s) 5877, 5887, 5890, 6221, 6361
FokI GGATG 2 cut(s) 6247, 6251
Fsp4HI GCNGC 5 cut(s) 5877, 5887, 5890, 6221, 6361
FspBI CTAG 2 cut(s) 5952, 6372
FspI TGCGCA 1 cut(s) 5880
GlaI GCGC 3 cut(s) 5880, 5946, 6657
GluI GCNGC 5 cut(s) 5877, 5887, 5890, 6221, 6361
GsuI CTGGAG 1 cut(s) 6300
HaeII RGCGCY 1 cut(s) 5948
HhaI GCGC 3 cut(s) 5881, 5947, 6658
Hin1II CATG 3 cut(s) 6093, 6303, 6335
Hin6I GCGC 3 cut(s) 5879, 5945, 6656
HinP1I GCGC 3 cut(s) 5879, 5945, 6656
HindIII AAGCTT 1 cut(s) 5905
Hpy99I CGWCG 1 cut(s) 5923
HpyCH4IV ACGT 1 cut(s) 6514
HpySE526I ACGT 1 cut(s) 6514
Hsp92II CATG 3 cut(s) 6093, 6303, 6335
HspAI GCGC 3 cut(s) 5879, 5945, 6656
Ksp22I TGATCA 1 cut(s) 6414
Kzo9I GATC 3 cut(s) 6085, 6116, 6414
Lsp1109I GCAGC 3 cut(s) 5863, 6232, 6372
LweI GCATC 2 cut(s) 6182, 6514
MaeI CTAG 2 cut(s) 5952, 6372
MaeII ACGT 1 cut(s) 6514
MalI GATC 3 cut(s) 6087, 6118, 6416
MboI GATC 3 cut(s) 6085, 6116, 6414
MboII GAAGA 4 cut(s) 5964, 6029, 6126, 6500
MfeI CAATTG 1 cut(s) 6198
MflI RGATCY 1 cut(s) 6116
MhlI GDGCHC 1 cut(s) 6484
MluCI AATT 8 cut(s) 6138, 6163, 6181, 6198, 6214, 6327, 6553, 6620
MspR9I CCNGG 3 cut(s) 6279, 6402, 6587
MunI CAATTG 1 cut(s) 6198
Mva1269I GAATGC 1 cut(s) 6608
MvaI CCWGG 2 cut(s) 6279, 6587
NciI CCSGG 1 cut(s) 6402
NcoI CCATGG 1 cut(s) 6089
NdeI CATATG 1 cut(s) 6338
NdeII GATC 3 cut(s) 6085, 6116, 6414
NlaIII CATG 3 cut(s) 6093, 6303, 6335
NsbI TGCGCA 1 cut(s) 5880
PcsI WCGNNNNNNNCGW 1 cut(s) 5889
PctI GAATGC 1 cut(s) 6608
PfoI TCCNGGA 1 cut(s) 6277
PkrI GCNGC 5 cut(s) 5878, 5888, 5891, 6222, 6362
Ppu21I YACGTR 1 cut(s) 6515
PpuMI RGGWCCY 1 cut(s) 6275
Psp5II RGGWCCY 1 cut(s) 6275
Psp6I CCWGG 2 cut(s) 6277, 6585
PspGI CCWGG 2 cut(s) 6277, 6585
PspPPI RGGWCCY 1 cut(s) 6275
PsuI RGATCY 1 cut(s) 6116
RsaI GTAC 2 cut(s) 6376, 6604
RsaNI GTAC 2 cut(s) 6375, 6603
SatI GCNGC 5 cut(s) 5877, 5887, 5890, 6221, 6361
Sau3AI GATC 3 cut(s) 6085, 6116, 6414
ScrFI CCNGG 3 cut(s) 6279, 6402, 6587
SduI GDGCHC 1 cut(s) 6484
SfaNI GCATC 2 cut(s) 6182, 6514
Sse9I AATT 8 cut(s) 6138, 6163, 6181, 6198, 6214, 6327, 6553, 6620
SspI AATATT 1 cut(s) 6228
SspMI CTAG 2 cut(s) 5952, 6372
StyD4I CCNGG 3 cut(s) 6277, 6400, 6585
StyI CCWWGG 2 cut(s) 6089, 6651
TaiI ACGT 1 cut(s) 6517
TasI AATT 8 cut(s) 6138, 6163, 6181, 6198, 6214, 6327, 6553, 6620
TatI WGTACW 2 cut(s) 6374, 6602
TauI GCSGC 2 cut(s) 5889, 5892
TscAI CASTG 1 cut(s) 6647
TseI GCWGC 3 cut(s) 5876, 6220, 6360
TspDTI ATGAA 2 cut(s) 6320, 6423
TspGWI ACGGA 1 cut(s) 5936
TspRI CASTG 1 cut(s) 6647
VneI GTGCAC 1 cut(s) 6480
XagI CCTNNNNNAGG 1 cut(s) 6375
XapI RAATTY 4 cut(s) 6163, 6214, 6327, 6620
XcmI CCANNNNNNNNNTGG 2 cut(s) 6620, 6623
XspI CTAG 2 cut(s) 5952, 6372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.