Rmu_sc0011258.1_g000002
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011258.1
N/A
Physical Location & Seq
Reverse (-)
13148 .. 16610
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011258.1_g000002.1.cds

Sequence Viewer

Length: 1884 bp
atgtgctgcagcggcttcacagttccgaagggataccgattccatccctccgacgaggagctgcttagtcactacttggagcagaagaataagtgcaaggactcccagatcactaccatcatccctgaaatcgatgtgtgcaagcacgagccacgcgagttgccagaactggcgttcacaagggcggaaagtctgggcaggaaatttttctttttcttcttcttttggtttgcaagggaagtgtcttgggacaatcagggaaagtggtacttcttcactccgcgtgattacaagtacaataatagcactcgctccaacaggactacaggtgaagggttttggaagataacagggaaggaccgtgcaatcaaggcccccggctccaaagctgtgattgggagaaagaggaccctgacattctacaaacgtggagtgccgaaatcccagaagaccagctgggttattcatgagtattatctcattcaggcacattctgatcctcctaagcagataggggactttgttgtctgctgcttgaagtacaagtcagataactttgatcatgataaggatgctccattctgcgatcgaggtagcagtagctgcagtgtggcctccaatgttgtaaatcaagctcaagaaaattgggcatcgaaagagctggttaatgttgttccaattcccagtggaaatgatgatgaagctgaaactggtggtggtatgattacagaagaagaggagtacctgactttaaaggagctgagagatgctcttcagattcccattggtaatccgcatgaattcgaagtccaaggcacgcaaactgatccttgtcctatagataagaatgatctttcaaccactgttgaaggccaacctgatagaagcaattcatctgatatgattaaagagctactagatgacccagaaaatctggattcactctttcttccgcctgcaccacctcaactacataactcaccaaccactgttgaaggccaacctgatagaagcaattcatctgatatgattaaagagctactagatgacccagaaaatctggattcactctttcatccgcctgcaccacctcaactacataactcaccaaccactgttgaaggccaacctgatagaagcaattcatctgatatgattaaagagctactagatgacccagaaaatctggattcactctttcatccgcctgcaccacctcaactacataactcaccaaccactgttgaaggccaacctgatagaagcaattcatctgatatgattaaagagctactagatgacccagaaaatctggattcactctttcatcagcctgcaccacctcaactacataactcaccaatgtataccaccaatgtccataatgatgaatgtcgtaagaggacatgtccatttgacgataataacccttctcttacgaagaagaatattatttcaacaaatgatgatgacgaattagttagcaacactgcatgtagttctgaaaatcaagctgcaaatatgattccagagggatattctcaactaggagcaaatctgggatcagaatttgattcatttctgccaaacgattacgattatacattaccatcaataaacagaggactgagagatttttcccatgacaataatttcattgagttggatgatttactatcttcatacgaaggtattaactcttctctcgcacagttcctacatacagttattgatggaggtagaggagtaaccagtgacagaaacaccgaagtagtacatggatcggcagtgaggctgcaggggcattgtactgctgtttatctgccccagaagaaactgaaagtcctggaagcagacaacagttcaaagctggcagcaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

627

Amino Acids

70.36

Weight (kDa)

4.81

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 1367
AccII CGCG 2 cut(s) 156, 283
AciI CCGC 7 cut(s) 12, 185, 281, 794, 953, 1079, 1205
AclWI GGATC 4 cut(s) 491, 821, 1570, 1789
AcsI RAATTY 3 cut(s) 203, 800, 1568
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 6 cut(s) 269, 296, 542, 743, 1776, 1810
AflIII ACRYGT 1 cut(s) 1406
AgsI TTSAA 8 cut(s) 538, 858, 869, 995, 1121, 1247, 1458, 1866
AjnI CCWGG 1 cut(s) 1845
AlwI GGATC 4 cut(s) 491, 821, 1570, 1789
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 6 cut(s) 372, 612, 871, 997, 1123, 1249
ApeKI GCWGC 8 cut(s) 6, 9, 61, 531, 603, 1514, 1795, 1874
ApoI RAATTY 3 cut(s) 203, 800, 1568
Asp700I GAANNNNTTC 5 cut(s) 206, 889, 1015, 1141, 1267
AspS9I GGNCC 3 cut(s) 358, 373, 408
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 5 cut(s) 341, 972, 1098, 1224, 1350
AsuII TTCGAA 1 cut(s) 804
AvaII GGWCC 2 cut(s) 358, 408
BarI GAAGNNNNNNTAC 2 cut(s) 1684, 1716
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 6 cut(s) 21, 48, 518, 590, 1501, 1782
BccI CCATC 4 cut(s) 51, 125, 1618, 1727
BciT130I CCWGG 1 cut(s) 1847
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 5 cut(s) 917, 1043, 1169, 1295, 1547
BfmI CTRYAG 5 cut(s) 7, 324, 604, 837, 1796
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1515, 1796, 1875
BlsI GCNGC 9 cut(s) 8, 11, 14, 63, 533, 605, 1516, 1797, 1876
Bme1390I CCNGG 2 cut(s) 378, 1847
Bme18I GGWCC 2 cut(s) 358, 408
BmgT120I GGNCC 3 cut(s) 358, 373, 408
BmiI GGNNCC 3 cut(s) 375, 382, 410
BmrFI CCNGG 2 cut(s) 378, 1847
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 3 cut(s) 562, 659, 757
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 754, 786
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 376, 811
Bse1I ACTGG 4 cut(s) 174, 684, 715, 1752
BseBI CCWGG 1 cut(s) 1847
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 376, 811
BseGI GGATG 6 cut(s) 43, 120, 577, 1075, 1201, 1672
BseMII CTCAG 2 cut(s) 752, 1619
BseNI ACTGG 4 cut(s) 174, 684, 715, 1752
BseRI GAGGAG 3 cut(s) 71, 752, 1758
BseXI GCAGC 6 cut(s) 21, 48, 518, 590, 1501, 1782
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 4 cut(s) 942, 1068, 1194, 1320
Bsh1236I CGCG 2 cut(s) 156, 283
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 6 cut(s) 374, 614, 873, 999, 1125, 1251
BshVI ATCGAT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 263, 530
BsmFI GGGAC 2 cut(s) 263, 530
BsnI GGCC 6 cut(s) 374, 614, 873, 999, 1125, 1251
Bsp119I TTCGAA 1 cut(s) 804
Bsp143I GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
BspACI CCGC 7 cut(s) 12, 185, 281, 794, 953, 1079, 1205
BspANI GGCC 6 cut(s) 374, 614, 873, 999, 1125, 1251
BspCNI CTCAG 2 cut(s) 753, 1620
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 2 cut(s) 156, 283
BspHI TCATGA 2 cut(s) 466, 562
BspLI GGNNCC 3 cut(s) 375, 382, 410
BspMAI CTGCAG 3 cut(s) 11, 608, 1800
BspPI GGATC 4 cut(s) 491, 821, 1570, 1789
BspQI GCTCTTC 1 cut(s) 777
BspT104I TTCGAA 1 cut(s) 804
BsrI ACTGG 4 cut(s) 174, 684, 715, 1752
BssECI CCNNGG 2 cut(s) 376, 811
BssMI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
BssNAI GTATAC 1 cut(s) 1368
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 811
Bst1107I GTATAC 1 cut(s) 1368
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 1847
Bst4CI ACNGT 9 cut(s) 22, 362, 865, 991, 1117, 1243, 1713, 1726, 1862
Bst6I CTCTTC 3 cut(s) 729, 777, 1705
BstAPI GCANNNNNTGC 1 cut(s) 603
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 7 cut(s) 143, 818, 957, 1083, 1209, 1335, 1872
BstDEI CTNAG 4 cut(s) 65, 504, 761, 1628
BstF5I GGATG 6 cut(s) 43, 120, 577, 1075, 1201, 1672
BstFNI CGCG 2 cut(s) 156, 283
BstKTI GATC 8 cut(s) 111, 499, 562, 589, 829, 853, 1565, 1784
BstMBI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1801
BstNI CCWGG 1 cut(s) 1847
BstNSI RCATGY 2 cut(s) 1410, 1497
BstSCI CCNGG 2 cut(s) 376, 1845
BstSFI CTRYAG 5 cut(s) 7, 324, 604, 837, 1796
BstUI CGCG 2 cut(s) 156, 283
BstV1I GCAGC 6 cut(s) 21, 48, 518, 590, 1501, 1782
BstV2I GAAGAC 1 cut(s) 455
BstZ17I GTATAC 1 cut(s) 1368
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 6 cut(s) 374, 614, 873, 999, 1125, 1251
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 6 cut(s) 43, 120, 577, 1075, 1201, 1672
BtsI GCAGTG 3 cut(s) 613, 1488, 1794
BtsIMutI CAGTG 9 cut(s) 613, 691, 861, 987, 1113, 1239, 1488, 1759, 1794
Cac8I GCNNGC 7 cut(s) 143, 818, 957, 1083, 1209, 1335, 1872
CaiI CAGNNNCTG 1 cut(s) 603
CciI TCATGA 2 cut(s) 466, 562
Cfr13I GGNCC 3 cut(s) 358, 373, 408
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 6 cut(s) 268, 295, 541, 742, 1775, 1809
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 7 cut(s) 467, 563, 797, 1407, 1494, 1643, 1778
CviQI GTAC 6 cut(s) 268, 295, 541, 742, 1775, 1809
DdeI CTNAG 4 cut(s) 65, 504, 761, 1628
DpnI GATC 8 cut(s) 110, 498, 561, 588, 828, 852, 1564, 1783
DpnII GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
DraI TTTAAA 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 3 cut(s) 729, 777, 1705
EarI CTCTTC 3 cut(s) 729, 777, 1705
EciI GGCGGA 4 cut(s) 200, 942, 1068, 1194
Eco130I CCWWGG 1 cut(s) 811
Eco47I GGWCC 2 cut(s) 358, 408
Eco57I CTGAAG 1 cut(s) 758
EcoO109I RGGNCCY 2 cut(s) 373, 408
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 1845
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 7 cut(s) 470, 566, 800, 1410, 1497, 1646, 1781
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 263, 530
FatI CATG 7 cut(s) 466, 562, 796, 1406, 1493, 1642, 1777
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 1367
Fnu4HI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1515, 1796, 1875
FokI GGATG 6 cut(s) 30, 107, 584, 1062, 1188, 1679
Fsp4HI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1515, 1796, 1875
FspBI CTAG 5 cut(s) 917, 1043, 1169, 1295, 1547
GluI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1515, 1796, 1875
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 6 cut(s) 374, 614, 873, 999, 1125, 1251
HapII CCGG 1 cut(s) 378
Hin1II CATG 7 cut(s) 470, 566, 800, 1410, 1497, 1646, 1781
HinfI GANTC 9 cut(s) 39, 101, 778, 938, 1064, 1190, 1316, 1525, 1574
HpaII CCGG 1 cut(s) 378
HphI GGTGA 5 cut(s) 341, 972, 1098, 1224, 1350
Hpy166II GTNNAC 2 cut(s) 177, 1368
Hpy188III TCNNGA 8 cut(s) 467, 563, 638, 935, 1061, 1187, 1313, 1529
Hpy8I GTNNAC 2 cut(s) 177, 1368
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 9 cut(s) 22, 326, 349, 863, 989, 1115, 1241, 1440, 1682
HpyCH4III ACNGT 9 cut(s) 22, 362, 865, 991, 1117, 1243, 1713, 1726, 1862
HpyCH4IV ACGT 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1801
HpyF3I CTNAG 4 cut(s) 65, 504, 761, 1628
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 7 cut(s) 470, 566, 800, 1410, 1497, 1646, 1781
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
LguI GCTCTTC 1 cut(s) 777
LmnI GCTCC 7 cut(s) 58, 79, 317, 386, 580, 757, 1550
Lsp1109I GCAGC 6 cut(s) 21, 48, 518, 590, 1501, 1782
LweI GCATC 3 cut(s) 562, 659, 757
MaeI CTAG 5 cut(s) 917, 1043, 1169, 1295, 1547
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 3 cut(s) 68, 1747, 1754
MalI GATC 8 cut(s) 110, 498, 561, 588, 828, 852, 1564, 1783
MboI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 3 cut(s) 75, 339, 1644
MroXI GAANNNNTTC 5 cut(s) 206, 889, 1015, 1141, 1267
MseI TTAA 7 cut(s) 666, 752, 906, 1032, 1158, 1284, 1695
MslI CAYNNNNRTG 1 cut(s) 1386
MspA1I CMGCKG 2 cut(s) 12, 456
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 378, 1847
MvaI CCWGG 1 cut(s) 1847
MvnI CGCG 2 cut(s) 156, 283
MwoI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1801
NciI CCSGG 1 cut(s) 378
NdeII GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
NlaIII CATG 7 cut(s) 470, 566, 800, 1410, 1497, 1646, 1781
NlaIV GGNNCC 3 cut(s) 375, 382, 410
NmuCI GTSAC 2 cut(s) 68, 1754
NspI RCATGY 2 cut(s) 1410, 1497
NspV TTCGAA 1 cut(s) 804
PagI TCATGA 2 cut(s) 466, 562
PciI ACATGT 1 cut(s) 1406
PciSI GCTCTTC 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 5 cut(s) 206, 889, 1015, 1141, 1267
PfeI GAWTC 8 cut(s) 39, 778, 938, 1064, 1190, 1316, 1525, 1574
PfoI TCCNGGA 1 cut(s) 1845
PkrI GCNGC 9 cut(s) 8, 11, 14, 63, 533, 605, 1516, 1797, 1876
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 408
PscI ACATGT 1 cut(s) 1406
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 1845
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 1845
PspN4I GGNNCC 3 cut(s) 375, 382, 410
PspPI GGNCC 3 cut(s) 358, 373, 408
PspPPI RGGWCCY 1 cut(s) 408
PstI CTGCAG 3 cut(s) 11, 608, 1800
PstNI CAGNNNCTG 1 cut(s) 603
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 6 cut(s) 269, 296, 542, 743, 1776, 1810
RsaNI GTAC 6 cut(s) 268, 295, 541, 742, 1775, 1809
RseI CAYNNNNRTG 1 cut(s) 1386
SapI GCTCTTC 1 cut(s) 777
SaqAI TTAA 7 cut(s) 666, 752, 906, 1032, 1158, 1284, 1695
SatI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1515, 1796, 1875
Sau3AI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1562, 1781
Sau96I GGNCC 3 cut(s) 358, 373, 408
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 378, 1847
SfaNI GCATC 3 cut(s) 562, 659, 757
SfcI CTRYAG 5 cut(s) 7, 324, 604, 837, 1796
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 2 cut(s) 358, 408
SmiMI CAYNNNNRTG 1 cut(s) 1386
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
SsiI CCGC 7 cut(s) 12, 185, 281, 794, 953, 1079, 1205
SspI AATATT 1 cut(s) 1450
SspMI CTAG 5 cut(s) 917, 1043, 1169, 1295, 1547
StyD4I CCNGG 2 cut(s) 376, 1845
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 9 cut(s) 22, 362, 865, 991, 1117, 1243, 1713, 1726, 1862
TaiI ACGT 1 cut(s) 430
TaqI TCGA 4 cut(s) 132, 589, 653, 804
TatI WGTACW 4 cut(s) 294, 540, 1774, 1808
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 8 cut(s) 39, 778, 938, 1064, 1190, 1316, 1525, 1574
Tru1I TTAA 7 cut(s) 666, 752, 906, 1032, 1158, 1284, 1695
Tru9I TTAA 7 cut(s) 666, 752, 906, 1032, 1158, 1284, 1695
TscAI CASTG 9 cut(s) 613, 691, 868, 994, 1120, 1246, 1495, 1759, 1794
TseFI GTSAC 2 cut(s) 68, 1754
TseI GCWGC 8 cut(s) 6, 9, 61, 531, 603, 1514, 1795, 1874
Tsp45I GTSAC 2 cut(s) 68, 1754
TspRI CASTG 9 cut(s) 613, 691, 868, 994, 1120, 1246, 1495, 1759, 1794
VpaK11BI GGWCC 2 cut(s) 358, 408
XapI RAATTY 3 cut(s) 203, 800, 1568
XceI RCATGY 2 cut(s) 1410, 1497
XmiI GTMKAC 1 cut(s) 1367
XmnI GAANNNNTTC 5 cut(s) 206, 889, 1015, 1141, 1267
XspI CTAG 5 cut(s) 917, 1043, 1169, 1295, 1547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.