Rmu_sc0011777.1_g000005

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011777.1
N/A
Physical Location & Seq
Forward (+)
23468 .. 25178
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011777.1_g000005.1.cds

Sequence Viewer

Length: 633 bp
atgtctatttacgggggcaaaatggttttgttcagggcaccagtaatccaattgctcaaatcagatgtgttcttaaagaagacattgaagttaagcaacgaggacatcattggctctggagagtatgggacaatttatatacttacacaggatgacaccatggcctttgctgtgaaaagattgaacagaggaagtgcatatggagatcgaagatttgagaaggaaattgaagcaatggggggtataaagcaccggaacatcgtgactcttaatggatattacactacactgctccacattataaccttcttatatacaaactgcttgcaggcttgctacttagggtgggctgcgcaagcgcgagacgcggggttgctgatggatcgagggtgggcaggttgcaggcgagatagagggtgggcgctggtgggcaggctgcaggcttgctgcgtggggtgggctgcgcaggccggggacgcggggctgctgatggatctaggtggaaggctgcaggcgagatcgagggtggtcgctggtgggcaggttgcaggcttgttgcgtggggtgggttgtgcaggcgcaggatgcggggctgctgatgcggcgacaatagcgcagagggcgaatgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

22.51

Weight (kDa)

9.37

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
Acc16I TGCGCA 2 cut(s) 354, 465
Acc36I ACCTGC 2 cut(s) 386, 532
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 3 cut(s) 361, 368, 479
AciI CCGC 4 cut(s) 368, 479, 588, 602
AclWI GGATC 2 cut(s) 390, 501
AgsI TTSAA 3 cut(s) 88, 184, 230
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 2 cut(s) 390, 501
AoxI GGCC 2 cut(s) 162, 468
ApeKI GCWGC 7 cut(s) 350, 436, 447, 461, 484, 508, 593
AspLEI GCGC 6 cut(s) 355, 361, 424, 466, 581, 616
AsuC2I CCSGG 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 7 cut(s) 337, 423, 434, 448, 471, 495, 580
BccI CCATC 2 cut(s) 373, 484
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 2 cut(s) 437, 509
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 2 cut(s) 386, 532
BisI GCNGC 8 cut(s) 351, 437, 448, 462, 485, 509, 594, 603
BlsI GCNGC 8 cut(s) 352, 438, 449, 463, 486, 510, 595, 604
Bme1390I CCNGG 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 575, 589
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 472
BsaJI CCNNGG 2 cut(s) 159, 471
BsaWI WCCGGW 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 159, 471
BseGI GGATG 2 cut(s) 157, 590
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 7 cut(s) 337, 423, 434, 448, 471, 495, 580
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 3 cut(s) 361, 368, 479
BshFI GGCC 2 cut(s) 164, 470
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 253, 471
BslFI GGGAC 2 cut(s) 142, 488
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 142, 488
BsnI GGCC 2 cut(s) 164, 470
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 205, 382, 493, 518
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 4 cut(s) 368, 479, 588, 602
BspANI GGCC 2 cut(s) 164, 470
BspFNI CGCG 3 cut(s) 361, 368, 479
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 2 cut(s) 441, 513
BspMI ACCTGC 2 cut(s) 386, 532
BspPI GGATC 2 cut(s) 390, 501
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 159, 471
BssMI GATC 4 cut(s) 205, 382, 493, 518
BssT1I CCWWGG 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 157, 590
BstFNI CGCG 3 cut(s) 361, 368, 479
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 6 cut(s) 355, 361, 424, 466, 581, 616
BstKTI GATC 4 cut(s) 208, 385, 496, 521
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 4 cut(s) 205, 382, 493, 518
BstMWI GCNNNNNNNGC 9 cut(s) 356, 365, 467, 476, 585, 599, 602, 611, 620
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 2 cut(s) 437, 509
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 3 cut(s) 361, 368, 479
BstV1I GCAGC 7 cut(s) 337, 423, 434, 448, 471, 495, 580
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 2 cut(s) 164, 470
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 157, 590
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 2 cut(s) 386, 532
CfoI GCGC 6 cut(s) 355, 361, 424, 466, 581, 616
CseI GACGC 2 cut(s) 374, 485
CviAII CATG 1 cut(s) 160
DdeI CTNAG 1 cut(s) 340
DpnI GATC 4 cut(s) 207, 384, 495, 520
DpnII GATC 4 cut(s) 205, 382, 493, 518
Eco130I CCWWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 1 cut(s) 163
FaqI GGGAC 2 cut(s) 142, 488
FatI CATG 1 cut(s) 159
FauI CCCGC 3 cut(s) 361, 472, 581
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 8 cut(s) 351, 437, 448, 462, 485, 509, 594, 603
FokI GGATG 2 cut(s) 164, 597
Fsp4HI GCNGC 8 cut(s) 351, 437, 448, 462, 485, 509, 594, 603
FspBI CTAG 1 cut(s) 497
FspI TGCGCA 2 cut(s) 354, 465
GlaI GCGC 6 cut(s) 354, 360, 423, 465, 580, 615
GluI GCNGC 8 cut(s) 351, 437, 448, 462, 485, 509, 594, 603
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 2 cut(s) 164, 470
HapII CCGG 2 cut(s) 253, 471
HgaI GACGC 2 cut(s) 374, 485
HhaI GCGC 6 cut(s) 355, 361, 424, 466, 581, 616
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 6 cut(s) 353, 359, 422, 464, 579, 614
HinP1I GCGC 6 cut(s) 353, 359, 422, 464, 579, 614
HinfI GANTC 1 cut(s) 265
HpaII CCGG 2 cut(s) 253, 471
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 117, 262
HpyAV CCTTC 3 cut(s) 214, 316, 498
HpyCH4V TGCA 7 cut(s) 197, 328, 402, 439, 511, 548, 575
HpyF10VI GCNNNNNNNGC 9 cut(s) 356, 365, 467, 476, 585, 599, 602, 611, 620
HpyF3I CTNAG 1 cut(s) 340
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 6 cut(s) 353, 359, 422, 464, 579, 614
Kzo9I GATC 4 cut(s) 205, 382, 493, 518
LmnI GCTCC 1 cut(s) 297
Lsp1109I GCAGC 7 cut(s) 337, 423, 434, 448, 471, 495, 580
LweI GCATC 2 cut(s) 575, 589
MaeI CTAG 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 262
MalI GATC 4 cut(s) 207, 384, 495, 520
MboI GATC 4 cut(s) 205, 382, 493, 518
MboII GAAGA 2 cut(s) 91, 222
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 50, 132, 225
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 6 cut(s) 94, 182, 380, 407, 516, 612
MseI TTAA 3 cut(s) 74, 92, 270
MspI CCGG 2 cut(s) 253, 471
MspR9I CCNGG 1 cut(s) 472
MunI CAATTG 1 cut(s) 50
MvnI CGCG 3 cut(s) 361, 368, 479
MwoI GCNNNNNNNGC 9 cut(s) 356, 365, 467, 476, 585, 599, 602, 611, 620
NciI CCSGG 1 cut(s) 472
NcoI CCATGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 199
NdeII GATC 4 cut(s) 205, 382, 493, 518
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 262
NsbI TGCGCA 2 cut(s) 354, 465
PkrI GCNGC 8 cut(s) 352, 438, 449, 463, 486, 510, 595, 604
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PsiI TTATAA 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 39
PstI CTGCAG 2 cut(s) 441, 513
PsuI RGATCY 1 cut(s) 493
SaqAI TTAA 3 cut(s) 74, 92, 270
SatI GCNGC 8 cut(s) 351, 437, 448, 462, 485, 509, 594, 603
Sau3AI GATC 4 cut(s) 205, 382, 493, 518
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 308, 400, 502, 546
SfaNI GCATC 2 cut(s) 575, 589
SfcI CTRYAG 2 cut(s) 437, 509
Sse9I AATT 3 cut(s) 50, 132, 225
SsiI CCGC 4 cut(s) 368, 479, 588, 602
SspMI CTAG 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 159
TaqI TCGA 3 cut(s) 208, 385, 521
TasI AATT 3 cut(s) 50, 132, 225
TauI GCSGC 1 cut(s) 605
Tru1I TTAA 3 cut(s) 74, 92, 270
Tru9I TTAA 3 cut(s) 74, 92, 270
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 7 cut(s) 350, 436, 447, 461, 484, 508, 593
Tsp45I GTSAC 1 cut(s) 262
TspRI CASTG 1 cut(s) 294
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.