Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011900.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17430 .. 18586

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011900.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtggccagccccagttgatcatgccccagcaaccatcctcatcctcctcagccagatgccccacctctccgaccccaaagtcatagccaccatgacccgcgccatctccgacgtcacccagacccactccgtcctcaacgccccggcgaccatcccgaccacaacctcctcccgcaaccacaccctcaacggcgatccaaactctccctcatcaccccttccgaaatcaccgccgaattctcccaccacgaccccaacttcgcccggatcaacaactgcagcttcggaggtaattagggggagtgccgacgccgatgcagttgaggaagaggtgagggaggtgaagcggagggcgtcgcggtggaggcagaggtggaagagctgggagatggtttggttggaggagaggacatcgaggtggtggaattggagggagatggaatctgggttgggttcagaggtggcggagaaggattcgggttggcggagagtaggggcggaggggaagggggagaggaggagggtctggtggtcaagggcgacgaagagtctaagtagcagtgtttgcaaggggcgcactagagccaaaccacgtcagagccggtgtcgaggaccatgtagagaggtggaagagctgggagatggtttggttggaggagaggacatcgaggtggtggaattggagggagatggaatctgggttgggttcagaggtggcggagaaggattcgggttgggggagagtaggggcggaggggaagggggagaggaggaaggtctggtggtcaagggcgacgaagaaggagaggagaagagtgaaggtgatggaaaagaagagatgggttttctttttctcctccattttttttgggtggggagaagagagagagagagggaaagagggtttggggaagaagaagtgggagagagagtgaagcatgcttctacaggaagaagctttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

322

Amino Acids

35.61

Weight (kDa)

5.54

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AatII	GACGTC	1 cut(s)	117
AccII	CGCG	2 cut(s)	102, 361
AclWI	GGATC	2 cut(s)	191, 277
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	3 cut(s)	114, 312, 356
AhdI	GACNNNNNGTC	1 cut(s)	549
AjiI	CACGTC	1 cut(s)	596
AjuI	GAANNNNNNNTTGG	2 cut(s)	891, 923
AluBI	AGCT	4 cut(s)	284, 384, 637, 960
AluI	AGCT	4 cut(s)	284, 384, 637, 960
AlwI	GGATC	2 cut(s)	191, 277
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	238
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AspLEI	GCGC	2 cut(s)	104, 579
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	2 cut(s)	146, 267
AsuHPI	GGTGA	6 cut(s)	109, 207, 222, 346, 355, 836
AvaII	GGWCC	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	7
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	9 cut(s)	44, 113, 161, 385, 433, 638, 686, 821, 835
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	146, 267
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	2 cut(s)	279, 948
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	146, 267
Bme18I	GGWCC	1 cut(s)	614
BmeRI	GACNNNNNGTC	1 cut(s)	549
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	614
BmrFI	CCNGG	2 cut(s)	146, 267
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	2 cut(s)	48, 307
BmuI	ACTGGG	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	146, 267
BsaHI	GRCGYC	3 cut(s)	114, 312, 356
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bse118I	RCCGGY	1 cut(s)	603
Bse1I	ACTGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	36, 42, 153
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	9 cut(s)	38, 160, 419, 532, 535, 672, 785, 824, 848
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	3 cut(s)	28, 384, 637
Bsh1236I	CGCG	2 cut(s)	102, 361
BshFI	GGCC	1 cut(s)	7
BsiSI	CCGG	3 cut(s)	146, 267, 604
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	19, 196, 269
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	2 cut(s)	102, 361
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	191, 277
BspQI	GCTCTTC	2 cut(s)	374, 627
BsrFI	RCCGGY	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	19, 196, 269
BssNI	GRCGYC	3 cut(s)	114, 312, 356
Bst6I	CTCTTC	7 cut(s)	324, 374, 542, 627, 809, 831, 877
BstACI	GRCGYC	3 cut(s)	114, 312, 356
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	9, 942
BstDEI	CTNAG	2 cut(s)	50, 554
BstF5I	GGATG	3 cut(s)	36, 42, 153
BstFNI	CGCG	2 cut(s)	102, 361
BstHHI	GCGC	2 cut(s)	104, 579
BstKTI	GATC	3 cut(s)	22, 199, 272
BstMBI	GATC	3 cut(s)	19, 196, 269
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 567, 576
BstNSI	RCATGY	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	144, 265
BstSFI	CTRYAG	2 cut(s)	279, 948
BstUI	CGCG	2 cut(s)	102, 361
BstV1I	GCAGC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	36, 42, 153
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	9, 942
CfoI	GCGC	2 cut(s)	104, 579
Cfr10I	RCCGGY	1 cut(s)	603
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	2 cut(s)	320, 345
CviAII	CATG	4 cut(s)	23, 94, 618, 941
DdeI	CTNAG	2 cut(s)	50, 554
DpnI	GATC	3 cut(s)	21, 198, 271
DpnII	GATC	3 cut(s)	19, 196, 269
DrdI	GACNNNNNNGTC	1 cut(s)	80
DriI	GACNNNNNGTC	1 cut(s)	549
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	7 cut(s)	324, 374, 542, 627, 809, 831, 877
Eam1105I	GACNNNNNGTC	1 cut(s)	549
EarI	CTCTTC	7 cut(s)	324, 374, 542, 627, 809, 831, 877
EciI	GGCGGA	5 cut(s)	482, 502, 515, 735, 768
Eco47I	GGWCC	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	238
FaeI	CATG	4 cut(s)	26, 97, 621, 944
FaiI	YATR	5 cut(s)	24, 86, 95, 619, 942
FatI	CATG	4 cut(s)	22, 93, 617, 940
FauI	CCCGC	2 cut(s)	107, 182
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	3 cut(s)	23, 29, 140
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	2 cut(s)	103, 578
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	3 cut(s)	32, 388, 641
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	3 cut(s)	146, 267, 604
HgaI	GACGC	2 cut(s)	320, 345
HhaI	GCGC	2 cut(s)	104, 579
Hin1I	GRCGYC	3 cut(s)	114, 312, 356
Hin1II	CATG	4 cut(s)	26, 97, 621, 944
Hin6I	GCGC	2 cut(s)	102, 577
HinP1I	GCGC	2 cut(s)	102, 577
HindIII	AAGCTT	1 cut(s)	958
HinfI	GANTC	5 cut(s)	443, 476, 550, 696, 729
HpaII	CCGG	3 cut(s)	146, 267, 604
HphI	GGTGA	6 cut(s)	109, 207, 222, 346, 355, 836
Hpy188I	TCNGA	7 cut(s)	73, 112, 225, 289, 460, 600, 713
Hpy188III	TCNNGA	1 cut(s)	157
Hpy99I	CGWCG	5 cut(s)	116, 314, 361, 547, 800
HpyAV	CCTTC	8 cut(s)	230, 466, 502, 719, 755, 770, 797, 815
HpyCH4IV	ACGT	2 cut(s)	114, 595
HpyCH4V	TGCA	3 cut(s)	281, 320, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 567, 576
HpyF3I	CTNAG	2 cut(s)	50, 554
HpySE526I	ACGT	2 cut(s)	114, 595
Hsp92I	GRCGYC	3 cut(s)	114, 312, 356
Hsp92II	CATG	4 cut(s)	26, 97, 621, 944
HspAI	GCGC	2 cut(s)	102, 577
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 196, 269
LguI	GCTCTTC	2 cut(s)	374, 627
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	48, 307
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	2 cut(s)	114, 595
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	21, 198, 271
MboI	GATC	3 cut(s)	19, 196, 269
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	4 cut(s)	238, 294, 427, 680
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	4 cut(s)	96, 135, 381, 634
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MslI	CAYNNNNRTG	2 cut(s)	418, 671
Msp20I	TGGCCA	1 cut(s)	7
MspI	CCGG	3 cut(s)	146, 267, 604
MspR9I	CCNGG	2 cut(s)	146, 267
MvnI	CGCG	2 cut(s)	102, 361
MwoI	GCNNNNNNNGC	3 cut(s)	367, 567, 576
NciI	CCSGG	2 cut(s)	146, 267
NdeII	GATC	3 cut(s)	19, 196, 269
NlaIII	CATG	4 cut(s)	26, 97, 621, 944
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	944
PciSI	GCTCTTC	2 cut(s)	374, 627
PfeI	GAWTC	4 cut(s)	443, 476, 696, 729
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PspFI	CCCAGC	3 cut(s)	28, 384, 637
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	418, 671
SapI	GCTCTTC	2 cut(s)	374, 627
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	19, 196, 269
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	146, 267
SfaNI	GCATC	2 cut(s)	48, 307
SfcI	CTRYAG	2 cut(s)	279, 948
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	2 cut(s)	418, 671
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	4 cut(s)	238, 294, 427, 680
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	144, 265
TaiI	ACGT	2 cut(s)	117, 598
TaqI	TCGA	3 cut(s)	416, 610, 669
TasI	AATT	4 cut(s)	238, 294, 427, 680
TfiI	GAWTC	4 cut(s)	443, 476, 696, 729
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	944
XspI	CTAG	1 cut(s)	582
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.