Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011943.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3303 .. 8003

Gene Structure 4701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011943.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgttgtgctgtggaaagggcttggatcggaaacaaagaggaaagaagcagccaacatggaggatcttttccttgaaggaactgcatgcagcaacaaacaactttaattatgacaacaaacttggagaaggaggatttggaagtgtttactggggtcagctctgggatggatcacaaattgcagttaaaaggttaaaggtctggagcaacaaagcagagatggaatttgcagttgaggttgagatactggcacgagttaggcataagaatctgctcagtttacgtggttattgtgcagaaggacaagagcgtttaattgtatatgattacatgccaaatttgagcttactttctcatcttcatggccaacattcagctgaatgccttcttgactggagtcggcggatgaatattgcaattggatctgctgagggaattgcaaagtttgatgcattagcagatcccaagctcaacggcaagtatgtagaggatgagctgaaaagagttatctttgtggccctactatgtgctcacaatcagcctgagagaagacctactatactggaagtggtagagcttctgaagggagaatcaaaagagaagttggctaaactagagaatgatgaactttttaagaatcaccaggctgcagactctaatgatgggacatcgggtgctgaagacagctcggatttcatctcagaggaaaaggatgacaagctggactcaaaggaggctgtgcctggcattgcacatattggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

254

Amino Acids

28.56

Weight (kDa)

6.1

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	5 cut(s)	33, 71, 178, 430, 455
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	224, 337
AcuI	CTGAAG	2 cut(s)	602, 699
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	642, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	8 cut(s)	160, 345, 377, 469, 496, 577, 687, 721
AluI	AGCT	8 cut(s)	160, 345, 377, 469, 496, 577, 687, 721
Alw21I	GWGCWC	1 cut(s)	532
AlwI	GGATC	5 cut(s)	33, 71, 178, 430, 455
AoxI	GGCC	2 cut(s)	364, 516
ApeKI	GCWGC	3 cut(s)	49, 89, 647
ApoI	RAATTY	2 cut(s)	224, 337
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	366
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	2 cut(s)	556, 687
Bbv12I	GWGCWC	1 cut(s)	532
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	61, 101, 634
BccI	CCATC	3 cut(s)	161, 214, 656
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	2 cut(s)	644, 744
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	648
BisI	GCNGC	3 cut(s)	50, 90, 648
BlsI	GCNGC	3 cut(s)	51, 91, 649
Bme1390I	CCNGG	2 cut(s)	644, 744
BmgT120I	GGNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	644, 744
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	556, 687
BpmI	CTGGAG	2 cut(s)	223, 415
Bpu10I	CCTNAGC	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	284
Bse1I	ACTGG	4 cut(s)	155, 252, 398, 567
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	644, 744
BseGI	GGATG	4 cut(s)	172, 411, 496, 718
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	4 cut(s)	289, 420, 534, 714
BseNI	ACTGG	4 cut(s)	155, 252, 398, 567
BseXI	GCAGC	3 cut(s)	61, 101, 634
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	366, 518
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	366, 518
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	5 cut(s)	25, 63, 170, 422, 460
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	2 cut(s)	366, 518
BspCNI	CTCAG	4 cut(s)	288, 421, 535, 713
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	5 cut(s)	33, 71, 178, 430, 455
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	4 cut(s)	155, 252, 398, 567
BssMI	GATC	5 cut(s)	25, 63, 170, 422, 460
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	644, 744
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	275, 429, 543, 700
BstF5I	GGATG	4 cut(s)	172, 411, 496, 718
BstKTI	GATC	5 cut(s)	28, 66, 173, 425, 463
BstMBI	GATC	5 cut(s)	25, 63, 170, 422, 460
BstNI	CCWGG	2 cut(s)	644, 744
BstNSI	RCATGY	2 cut(s)	89, 334
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	642, 742
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	61, 101, 634
BstV2I	GAAGAC	2 cut(s)	556, 687
BstX2I	RGATCY	3 cut(s)	63, 422, 460
BstYI	RGATCY	3 cut(s)	63, 422, 460
BsuRI	GGCC	2 cut(s)	366, 518
BtsCI	GGATG	4 cut(s)	172, 411, 496, 718
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	517
CviAII	CATG	4 cut(s)	57, 86, 331, 362
DdeI	CTNAG	4 cut(s)	275, 429, 543, 700
DpnI	GATC	5 cut(s)	27, 65, 172, 424, 462
DpnII	GATC	5 cut(s)	25, 63, 170, 422, 460
EaeI	YGGCCR	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	602, 699
EcoRII	CCWGG	2 cut(s)	642, 742
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	4 cut(s)	60, 89, 334, 365
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	4 cut(s)	56, 85, 330, 361
Fnu4HI	GCNGC	3 cut(s)	50, 90, 648
FokI	GGATG	4 cut(s)	179, 418, 503, 725
Fsp4HI	GCNGC	3 cut(s)	50, 90, 648
FspBI	CTAG	1 cut(s)	614
GluI	GCNGC	3 cut(s)	50, 90, 648
GsuI	CTGGAG	2 cut(s)	223, 415
HaeIII	GGCC	2 cut(s)	366, 518
Hin1II	CATG	4 cut(s)	60, 89, 334, 365
HinfI	GANTC	6 cut(s)	268, 397, 590, 637, 653, 725
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	148, 281
Hpy188I	TCNGA	4 cut(s)	30, 582, 691, 703
Hpy188III	TCNNGA	2 cut(s)	202, 389
Hpy8I	GTNNAC	2 cut(s)	148, 281
HpyAV	CCTTC	5 cut(s)	70, 122, 293, 395, 577
HpyCH4IV	ACGT	1 cut(s)	283
HpyF3I	CTNAG	4 cut(s)	275, 429, 543, 700
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	4 cut(s)	60, 89, 334, 365
Kzo9I	GATC	5 cut(s)	25, 63, 170, 422, 460
LmnI	GCTCC	1 cut(s)	204
Lsp1109I	GCAGC	3 cut(s)	61, 101, 634
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	1 cut(s)	283
MalI	GATC	5 cut(s)	27, 65, 172, 424, 462
MboI	GATC	5 cut(s)	25, 63, 170, 422, 460
MboII	GAAGA	3 cut(s)	350, 561, 692
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	3 cut(s)	63, 422, 460
MhlI	GDGCHC	1 cut(s)	532
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	7 cut(s)	106, 177, 224, 315, 337, 417, 435
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	3 cut(s)	406, 647, 719
MnlI	CCTC	8 cut(s)	32, 54, 125, 229, 424, 481, 697, 727
Mox20I	TGGCCA	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	5 cut(s)	105, 186, 194, 314, 633
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	644, 744
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	2 cut(s)	644, 744
NdeII	GATC	5 cut(s)	25, 63, 170, 422, 460
NlaIII	CATG	4 cut(s)	60, 89, 334, 365
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	89, 334
PaeI	GCATGC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	268, 590, 637
PkrI	GCNGC	3 cut(s)	51, 91, 649
PleI	GAGTC	3 cut(s)	405, 647, 719
PpsI	GAGTC	3 cut(s)	405, 647, 719
Ppu21I	YACGTR	1 cut(s)	284
PshAI	GACNNNNGTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	642, 742
PspGI	CCWGG	2 cut(s)	642, 742
PspPI	GGNCC	1 cut(s)	517
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	3 cut(s)	63, 422, 460
PvuII	CAGCTG	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	5 cut(s)	105, 186, 194, 314, 633
SatI	GCNGC	3 cut(s)	50, 90, 648
Sau3AI	GATC	5 cut(s)	25, 63, 170, 422, 460
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	3 cut(s)	406, 647, 719
ScrFI	CCNGG	2 cut(s)	644, 744
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	360
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	7 cut(s)	106, 177, 224, 315, 337, 417, 435
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	2 cut(s)	642, 742
TaiI	ACGT	1 cut(s)	286
TasI	AATT	7 cut(s)	106, 177, 224, 315, 337, 417, 435
TfiI	GAWTC	3 cut(s)	268, 590, 637
Tru1I	TTAA	5 cut(s)	105, 186, 194, 314, 633
Tru9I	TTAA	5 cut(s)	105, 186, 194, 314, 633
TseI	GCWGC	3 cut(s)	49, 89, 647
TspDTI	ATGAA	4 cut(s)	350, 422, 639, 685
XapI	RAATTY	2 cut(s)	224, 337
XceI	RCATGY	2 cut(s)	89, 334
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.