Rmu_sc0012332.1_g000001

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012332.1
N/A
Physical Location & Seq
Forward (+)
1208 .. 3272
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012332.1_g000001.1.cds

Sequence Viewer

Length: 762 bp
atggtcaacaaggttagcgacccggctgatcggaaatcgttctcgaaggtctgcaagctatggtataaagtggagagtctaaaccgatcatcacttcgtcttctcggtcccgattttccccgtcaggaaatgggtctatctcaaaaacccctcaagacattgatccttaattggatcactagcattactgatgttggggtctcgcatttgcagaaaatgcattgcttggagcacctgagtttggctgactgttcacaaccagagatcacttggagatgtcgcaatctcggccattttaaccctaaaaaaattgagcttgtgcaggctgggcgaagtgtcggaccgcaccattattgctccagctcagaattgccccaacttggagatgggttatttcgtccaagaacgatcaatagcatcttcttcttggacgtcactcagactggcctcgtcttcagccaaaggccgccctcgtcttctctccttcagatcgacgtcgtcattcattcaaagaccggtcgtcctcatcttcctgacccatctgcaccagctgttgtcttcatcttcctgctccatcgcacaacagctccatcgagccaaaccggcgtcgctcattcatctcagcgtcgcccatccagaccggcatctcgcgcccagatccggcttcgtctccgacaacccagaccatcgttgcttccattcctcactcaagtcggccggatccttcagttggcagcccaagtccgaccaggtctgacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

253

Amino Acids

28.32

Weight (kDa)

10.73

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 435, 498
AccII CGCG 1 cut(s) 651
AciI CCGC 2 cut(s) 344, 467
AclWI GGATC 5 cut(s) 157, 182, 652, 715, 728
AcoI YGGCCR 2 cut(s) 289, 715
AcuI CTGAAG 3 cut(s) 439, 470, 710
AcyI GRCGYC 3 cut(s) 432, 495, 606
AfiI CCNNNNNNNGG 4 cut(s) 241, 380, 660, 730
AgeI ACCGGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 510
AhdI GACNNNNNGTC 1 cut(s) 519
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 5 cut(s) 58, 316, 363, 551, 587
AluI AGCT 5 cut(s) 58, 316, 363, 551, 587
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 205, 674
AlwI GGATC 5 cut(s) 157, 182, 652, 715, 728
AoxI GGCC 4 cut(s) 289, 445, 464, 715
ApeKI GCWGC 1 cut(s) 734
AsiGI ACCGGT 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 2 cut(s) 107, 341
AsuC2I CCSGG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 107, 341
BamHI GGATCC 1 cut(s) 720
BbsI GAAGAC 4 cut(s) 92, 445, 468, 550
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 746
BccI CCATC 6 cut(s) 380, 547, 582, 598, 640, 694
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 205, 674
BfaI CTAG 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 603
BisI GCNGC 2 cut(s) 467, 735
BlsI GCNGC 2 cut(s) 468, 736
Bme1390I CCNGG 2 cut(s) 23, 750
Bme18I GGWCC 2 cut(s) 107, 341
BmeRI GACNNNNNGTC 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 107, 341
BmiI GGNNCC 2 cut(s) 109, 722
BmrFI CCNGG 2 cut(s) 23, 750
BmsI GCATC 2 cut(s) 426, 653
BpiI GAAGAC 4 cut(s) 92, 445, 468, 550
BpmI CTGGAG 1 cut(s) 343
BpuEI CTTGAG 2 cut(s) 137, 693
BpuMI CCSGG 1 cut(s) 23
BsaHI GRCGYC 3 cut(s) 432, 495, 606
BsaI GGTCTC 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 380, 660, 730
Bse118I RCCGGY 3 cut(s) 515, 602, 640
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 750
BseGI GGATG 1 cut(s) 632
BseLI CCNNNNNNNGG 4 cut(s) 241, 380, 660, 730
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 4 cut(s) 227, 378, 452, 635
BseNI ACTGG 1 cut(s) 448
BseX3I CGGCCG 1 cut(s) 715
BseXI GCAGC 1 cut(s) 746
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 2 cut(s) 341, 528
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 2 cut(s) 520, 718
BshFI GGCC 4 cut(s) 291, 447, 466, 717
BshTI ACCGGT 1 cut(s) 515
BsiEI CGRYCG 2 cut(s) 520, 718
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 6 cut(s) 23, 516, 603, 641, 661, 718
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 4 cut(s) 241, 380, 660, 730
BsmAI GTCTC 2 cut(s) 205, 674
BsmBI CGTCTC 1 cut(s) 674
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 4 cut(s) 291, 447, 466, 717
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
BspACI CCGC 2 cut(s) 344, 467
BspANI GGCC 4 cut(s) 291, 447, 466, 717
BspCNI CTCAG 4 cut(s) 228, 377, 451, 634
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 109, 722
BspPI GGATC 5 cut(s) 157, 182, 652, 715, 728
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 3 cut(s) 515, 602, 640
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 3 cut(s) 515, 602, 640
BssMI GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
BssNI GRCGYC 3 cut(s) 432, 495, 606
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 3 cut(s) 432, 495, 606
BstAPI GCANNNNNTGC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 56, 324
BstDEI CTNAG 4 cut(s) 236, 364, 438, 621
BstF5I GGATG 1 cut(s) 632
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 9 cut(s) 31, 89, 165, 177, 267, 411, 492, 660, 723
BstMAI GTCTC 2 cut(s) 205, 674
BstMBI GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
BstMCI CGRYCG 2 cut(s) 520, 718
BstMWI GCNNNNNNNGC 5 cut(s) 217, 288, 328, 603, 650
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 21, 748
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 746
BstV2I GAAGAC 4 cut(s) 92, 445, 468, 550
BstX2I RGATCY 2 cut(s) 657, 720
BstYI RGATCY 2 cut(s) 657, 720
BstZI CGGCCG 1 cut(s) 715
BsuRI GGCC 4 cut(s) 291, 447, 466, 717
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 1 cut(s) 632
Cac8I GCNNGC 2 cut(s) 56, 324
CfoI GCGC 1 cut(s) 653
Cfr10I RCCGGY 3 cut(s) 515, 602, 640
Cfr13I GGNCC 2 cut(s) 107, 341
CpoI CGGWCCG 1 cut(s) 341
CseI GACGC 2 cut(s) 595, 614
CsiI ACCWGGT 1 cut(s) 748
CspAI ACCGGT 1 cut(s) 515
CspI CGGWCCG 1 cut(s) 341
DdeI CTNAG 4 cut(s) 236, 364, 438, 621
DpnI GATC 9 cut(s) 30, 88, 164, 176, 266, 410, 491, 659, 722
DpnII GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
DriI GACNNNNNGTC 1 cut(s) 519
EaeI YGGCCR 2 cut(s) 289, 715
EagI CGGCCG 1 cut(s) 715
Eam1105I GACNNNNNGTC 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 715
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 107, 341
Eco52I CGGCCG 1 cut(s) 715
Eco57I CTGAAG 3 cut(s) 439, 470, 710
EcoRII CCWGG 1 cut(s) 748
EcoT22I ATGCAT 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 674
FaiI YATR 2 cut(s) 61, 66
FaqI GGGAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 467, 735
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 2 cut(s) 467, 735
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 652
GluI GCNGC 2 cut(s) 467, 735
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 4 cut(s) 291, 447, 466, 717
HapII CCGG 6 cut(s) 23, 516, 603, 641, 661, 718
HgaI GACGC 2 cut(s) 595, 614
HhaI GCGC 1 cut(s) 653
Hin1I GRCGYC 3 cut(s) 432, 495, 606
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 76
HpaII CCGG 6 cut(s) 23, 516, 603, 641, 661, 718
Hpy166II GTNNAC 2 cut(s) 7, 254
Hpy188I TCNGA 8 cut(s) 33, 341, 367, 441, 489, 674, 746, 756
Hpy188III TCNNGA 6 cut(s) 43, 110, 125, 154, 533, 636
Hpy8I GTNNAC 2 cut(s) 7, 254
Hpy99I CGWCG 4 cut(s) 497, 500, 611, 630
HpyAV CCTTC 3 cut(s) 40, 494, 734
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 432, 495
HpyCH4V TGCA 5 cut(s) 54, 211, 220, 322, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 288, 328, 603, 650
HpyF3I CTNAG 4 cut(s) 236, 364, 438, 621
HpySE526I ACGT 2 cut(s) 432, 495
Hsp92I GRCGYC 3 cut(s) 432, 495, 606
HspAI GCGC 1 cut(s) 651
Kzo9I GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
LmnI GCTCC 4 cut(s) 229, 362, 576, 592
Lsp1109I GCAGC 1 cut(s) 746
LweI GCATC 2 cut(s) 426, 653
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 432, 495
MaeIII GTNAC 1 cut(s) 433
MalI GATC 9 cut(s) 30, 88, 164, 176, 266, 410, 491, 659, 722
MboI GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
MboII GAAGA 8 cut(s) 92, 412, 415, 445, 468, 521, 550, 556
MflI RGATCY 2 cut(s) 657, 720
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 169, 309, 368
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 319, 697
MnlI CCTC 5 cut(s) 161, 458, 481, 534, 713
Mph1103I ATGCAT 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 2 cut(s) 168, 297
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 6 cut(s) 23, 516, 603, 641, 661, 718
MspR9I CCNGG 2 cut(s) 23, 750
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 5 cut(s) 217, 288, 328, 603, 650
NciI CCSGG 1 cut(s) 23
NdeII GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
NlaIV GGNNCC 2 cut(s) 109, 722
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 38
PflFI GACNNNGTC 2 cut(s) 497, 750
PinAI ACCGGT 1 cut(s) 515
PkrI GCNGC 2 cut(s) 468, 736
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 109, 722
PspPI GGNCC 2 cut(s) 107, 341
PsuI RGATCY 2 cut(s) 657, 720
PsyI GACNNNGTC 2 cut(s) 497, 750
PvuII CAGCTG 1 cut(s) 551
Rsr2I CGGWCCG 1 cut(s) 341
RsrII CGGWCCG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 168, 297
SatI GCNGC 2 cut(s) 467, 735
Sau3AI GATC 9 cut(s) 28, 86, 162, 174, 264, 408, 489, 657, 720
Sau96I GGNCC 2 cut(s) 107, 341
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 23, 750
SduI GDGCHC 1 cut(s) 234
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 2 cut(s) 426, 653
SinI GGWCC 2 cut(s) 107, 341
SmlI CTYRAG 2 cut(s) 152, 708
SmoI CTYRAG 2 cut(s) 152, 708
Sse9I AATT 3 cut(s) 169, 309, 368
SsiI CCGC 2 cut(s) 344, 467
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 21, 748
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 2 cut(s) 435, 498
TaqI TCGA 3 cut(s) 44, 492, 593
TaqII GACCGA 1 cut(s) 95
TasI AATT 3 cut(s) 169, 309, 368
TauI GCSGC 1 cut(s) 469
Tru1I TTAA 2 cut(s) 168, 297
Tru9I TTAA 2 cut(s) 168, 297
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 734
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 494, 550, 606
Tth111I GACNNNGTC 2 cut(s) 497, 750
VpaK11BI GGWCC 2 cut(s) 107, 341
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 383
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 180
ZraI GACGTC 2 cut(s) 433, 496
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.