Rmu_sc0012840.1_g000005

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012840.1
N/A
Physical Location & Seq
Reverse (-)
9560 .. 12077
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012840.1_g000005.1.cds

Sequence Viewer

Length: 2205 bp
atggagaacttcgggctgttttctctggtgatagtctttgtgttttcaaagacttgtgaagctcaatcaaggtcttttttgataaactgtggtacaaattccagtgtcactgtgagtggtaggaaatgggtcggtgattcatcccctaacaataacatcactctcagttccagtggaattcctgcctccactaatgtcaaaagtgttgatgattcgacatatggagagctctataaaacggctcgaatgttcgagagtagcttgaactacacattccaaggtgttaggggagactattttgttaggctccatttcagtcctttctcctttgatgactacaatgtaaatgtgtcttcgtttggagttgtggcaaatggtctgaaactggttgagaaattcgaggttccaggtgagttattacacaagaatgcatacctgcagggttcaggaagcaattcaacttcttcaatagtcaaggagtatgttttggcaattaatagggatgcactagtcattgagttcatcccggacaaggagacattcgggtttattaatgcaatcgagattgttccagccgtagatgagctctttgcaggatcagctagtaaagtgggtggaaatggtgcaaatgtgaatgtaagttggcaggggattgaaactatgtacaggttgaatgttggtggttctgaagttagtcccagtcaggattcagatctttggagaaaatgggagatggatactagctacatgatcacagcaaatgccggggtagaaatcaaaaacagttccaatattacctattcgtctgtgaatgattcctcactggctcctcttgttgtctatgagagtgcaagaactatgtccaacaatgaagtcttggagaaaaggttcaacatgtcatggaagtttgaagtggatcctggttttgattatttgatccgactacatttctgtgagcttgtttttgacaaggcaaaccagaggatattcagagtctacataaacaacaggactgcagcagataattacaatgtgttcgttcgagcaggagggatgaacaaagcatatcatcaggatttctttgatgtggtgtcttcaaaagtcaagacactgtggattcagttgggtcctgacacaaatgttggggccgcaggaactgatgcactattgaatggcttggagattttcaagatcagccgaaatgggaatcttgcttatgtggacaactatgagtttcgaggttccagggatgcactagtcattgagttcatcccggacaaggagacattcgggtttattaatgcaatcgagattgttccagccgtagatgagctctttgcaggatcagctagtaaagtgggtggaaatggtgcaaatgtgaatgtaagttggcaggggatcgaaactatgtacaggttgaatgttggtggttctgaagttagtcccagtcaggattctgatctttggagaaaatgggagatggatactagctacatgatcacagcaaatgccggggtagaaatcaaaaacagttccaatattacctattcgtctgtgaatgattcctcactggctcctcttgttgtctatgagagtgcaagaactatgtccaacaatgaagtcttggagaaaaggttcaacatgtcatggaagtttgaagtggatcctggttttgattatttgatccgactacatttctgtgagcttgtttttgacaaggcaaaccagaggatattcagagtctacataaacaacaggactgcagcagataattacaatgtgttcgttcgagcaggagggatgaacaaagcatatcatcaggatttctttgatgtggtgtcttcaaaagtcaagacactgtggattcagttgggtcctgacacaaatgttggggctgcaggaactgatgcactattgaatggcttggagattttcaagatcagccgaaatgggaatcttgcttatgtggacaactatgagtcgagtgccaattcatctaaagcaagttcgaaaaatgcaattctttggggggcaattggagcagcaactagtaattttgatgaaagtttagtgattggagttggaggctttggaaaggtctacaagggtgaaattgaggatggcactcttgtagcaatcaagcggtccaacccccaatcccaacaaggcctggctgaatttgagacggagattgagatgctttaa

Protein Analysis

734

Amino Acids

81.12

Weight (kDa)

4.94

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
AccI GTMKAC 3 cut(s) 996, 1743, 2100
AciI CCGC 2 cut(s) 1149, 2143
AclWI GGATC 9 cut(s) 604, 911, 924, 931, 1351, 1406, 1658, 1671, 1678
AcsI RAATTY 4 cut(s) 97, 177, 395, 2177
AcuI CTGAAG 2 cut(s) 708, 1455
AfaI GTAC 3 cut(s) 94, 665, 1412
AfiI CCNNNNNNNGG 2 cut(s) 532, 1279
AflIII ACRYGT 2 cut(s) 894, 1641
AhlI ACTAGT 3 cut(s) 508, 1255, 2048
AjnI CCWGG 5 cut(s) 406, 919, 1244, 1666, 2169
AloI GAACNNNNNNTCC 4 cut(s) 872, 904, 1619, 1651
Alw21I GWGCWC 3 cut(s) 231, 588, 1335
Alw26I GTCTC 4 cut(s) 285, 530, 1277, 2177
AlwI GGATC 9 cut(s) 604, 911, 924, 931, 1351, 1406, 1658, 1671, 1678
AlwNI CAGNNNCTG 2 cut(s) 1157, 1904
AoxI GGCC 2 cut(s) 1146, 2167
ApeKI GCWGC 4 cut(s) 1016, 1763, 1895, 2042
ApoI RAATTY 4 cut(s) 97, 177, 395, 2177
AseI ATTAAT 3 cut(s) 495, 552, 1299
Asp700I GAANNNNTTC 3 cut(s) 454, 887, 1634
AspS9I GGNCC 4 cut(s) 1127, 1146, 1874, 2145
AsuC2I CCSGG 4 cut(s) 527, 766, 1274, 1513
AsuHPI GGTGA 4 cut(s) 40, 146, 422, 2120
AsuII TTCGAA 1 cut(s) 2009
AvaII GGWCC 3 cut(s) 1127, 1874, 2145
BamHI GGATCC 2 cut(s) 916, 1663
BanII GRGCYC 3 cut(s) 231, 588, 1335
BbsI GAAGAC 3 cut(s) 345, 1086, 1833
Bbv12I GWGCWC 3 cut(s) 231, 588, 1335
BbvI GCAGC 4 cut(s) 1028, 1775, 1882, 2054
BccI CCATC 3 cut(s) 727, 1474, 2114
BceAI ACGGC 3 cut(s) 255, 560, 1307
BciT130I CCWGG 5 cut(s) 408, 921, 1246, 1668, 2171
BciVI GTATCC 2 cut(s) 730, 1477
BclI TGATCA 2 cut(s) 750, 1497
BcnI CCSGG 4 cut(s) 527, 766, 1274, 1513
BcoDI GTCTC 4 cut(s) 285, 530, 1277, 2177
BcuI ACTAGT 3 cut(s) 508, 1255, 2048
BfaI CTAG 7 cut(s) 509, 603, 741, 1256, 1350, 1488, 2049
BfmI CTRYAG 4 cut(s) 437, 1014, 1761, 1896
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 2 cut(s) 730, 1477
BglII AGATCT 1 cut(s) 712
BisI GCNGC 5 cut(s) 1017, 1149, 1764, 1896, 2043
BlsI GCNGC 5 cut(s) 1018, 1150, 1765, 1897, 2044
Bme1390I CCNGG 9 cut(s) 408, 527, 766, 921, 1246, 1274, 1513, 1668, 2171
Bme18I GGWCC 3 cut(s) 1127, 1874, 2145
BmgT120I GGNCC 4 cut(s) 1127, 1146, 1874, 2145
BmrFI CCNGG 9 cut(s) 408, 527, 766, 921, 1246, 1274, 1513, 1668, 2171
BmrI ACTGGG 2 cut(s) 693, 1440
BmsI GCATC 5 cut(s) 493, 1150, 1240, 1897, 2187
BmuI ACTGGG 2 cut(s) 693, 1440
BpiI GAAGAC 3 cut(s) 345, 1086, 1833
Bpu14I TTCGAA 1 cut(s) 2009
BpuMI CCSGG 4 cut(s) 527, 766, 1274, 1513
BsaBI GATNNNNATC 2 cut(s) 711, 1458
BsaJI CCNNGG 4 cut(s) 277, 765, 1245, 1512
BsaXI ACNNNNNCTCC 4 cut(s) 872, 902, 1619, 1649
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 1279
Bse1I ACTGG 7 cut(s) 102, 171, 390, 699, 828, 1446, 1575
Bse8I GATNNNNATC 2 cut(s) 711, 1458
BseBI CCWGG 5 cut(s) 408, 921, 1246, 1668, 2171
BseDI CCNNGG 4 cut(s) 277, 765, 1245, 1512
BseGI GGATG 8 cut(s) 140, 508, 522, 1059, 1255, 1269, 1806, 2125
BseJI GATNNNNATC 2 cut(s) 711, 1458
BseLI CCNNNNNNNGG 2 cut(s) 532, 1279
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 7 cut(s) 102, 171, 390, 699, 828, 1446, 1575
BseRI GAGGAG 2 cut(s) 819, 1566
BseXI GCAGC 4 cut(s) 1028, 1775, 1882, 2054
BshFI GGCC 2 cut(s) 1148, 2169
BsiHKAI GWGCWC 3 cut(s) 231, 588, 1335
BsiSI CCGG 4 cut(s) 527, 765, 1274, 1512
BslFI GGGAC 2 cut(s) 681, 1428
BslI CCNNNNNNNGG 2 cut(s) 532, 1279
BsmAI GTCTC 4 cut(s) 285, 530, 1277, 2177
BsmBI CGTCTC 1 cut(s) 2177
BsmFI GGGAC 2 cut(s) 681, 1428
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 1148, 2169
Bsp119I TTCGAA 1 cut(s) 2009
Bsp1286I GDGCHC 3 cut(s) 231, 588, 1335
Bsp1407I TGTACA 2 cut(s) 663, 1410
BspACI CCGC 2 cut(s) 1149, 2143
BspANI GGCC 2 cut(s) 1148, 2169
BspCNI CTCAG 1 cut(s) 177
BspMAI CTGCAG 4 cut(s) 441, 1018, 1765, 1900
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 9 cut(s) 604, 911, 924, 931, 1351, 1406, 1658, 1671, 1678
BspT104I TTCGAA 1 cut(s) 2009
BsrGI TGTACA 2 cut(s) 663, 1410
BsrI ACTGG 7 cut(s) 102, 171, 390, 699, 828, 1446, 1575
BssECI CCNNGG 4 cut(s) 277, 765, 1245, 1512
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 5 cut(s) 408, 921, 1246, 1668, 2171
Bst4CI ACNGT 6 cut(s) 89, 112, 785, 1113, 1532, 1860
BstAUI TGTACA 2 cut(s) 663, 1410
BstBI TTCGAA 1 cut(s) 2009
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 8 cut(s) 140, 508, 522, 1059, 1255, 1269, 1806, 2125
BstMAI GTCTC 4 cut(s) 285, 530, 1277, 2177
BstMWI GCNNNNNNNGC 3 cut(s) 599, 1346, 2039
BstNI CCWGG 5 cut(s) 408, 921, 1246, 1668, 2171
BstNSI RCATGY 2 cut(s) 898, 1645
BstSCI CCNGG 9 cut(s) 406, 525, 764, 919, 1244, 1272, 1511, 1666, 2169
BstSFI CTRYAG 4 cut(s) 437, 1014, 1761, 1896
BstV1I GCAGC 4 cut(s) 1028, 1775, 1882, 2054
BstV2I GAAGAC 3 cut(s) 345, 1086, 1833
BstX2I RGATCY 3 cut(s) 712, 916, 1663
BstYI RGATCY 3 cut(s) 712, 916, 1663
BsuI GTATCC 2 cut(s) 730, 1477
BsuRI GGCC 2 cut(s) 1148, 2169
BtsCI GGATG 8 cut(s) 140, 508, 522, 1059, 1255, 1269, 1806, 2125
BtsIMutI CAGTG 7 cut(s) 108, 109, 178, 821, 1109, 1568, 1856
BveI ACCTGC 1 cut(s) 444
CaiI CAGNNNCTG 2 cut(s) 1157, 1904
Cfr13I GGNCC 4 cut(s) 1127, 1146, 1874, 2145
Csp6I GTAC 3 cut(s) 93, 664, 1411
CviAII CATG 6 cut(s) 748, 895, 900, 1495, 1642, 1647
CviQI GTAC 3 cut(s) 93, 664, 1411
DdeI CTNAG 1 cut(s) 164
Ecl136II GAGCTC 3 cut(s) 229, 586, 1333
Eco130I CCWWGG 1 cut(s) 277
Eco147I AGGCCT 1 cut(s) 2169
Eco24I GRGCYC 3 cut(s) 231, 588, 1335
Eco47I GGWCC 3 cut(s) 1127, 1874, 2145
Eco53kI GAGCTC 3 cut(s) 229, 586, 1333
Eco57I CTGAAG 2 cut(s) 708, 1455
EcoICRI GAGCTC 3 cut(s) 229, 586, 1333
EcoO109I RGGNCCY 2 cut(s) 1127, 1874
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 5 cut(s) 406, 919, 1244, 1666, 2169
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 3 cut(s) 231, 588, 1335
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 2177
FaeI CATG 6 cut(s) 751, 898, 903, 1498, 1645, 1650
FaqI GGGAC 2 cut(s) 681, 1428
FatI CATG 6 cut(s) 747, 894, 899, 1494, 1641, 1646
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 2 cut(s) 750, 1497
FblI GTMKAC 3 cut(s) 996, 1743, 2100
Fnu4HI GCNGC 5 cut(s) 1017, 1149, 1764, 1896, 2043
FokI GGATG 8 cut(s) 127, 509, 515, 1066, 1256, 1262, 1813, 2132
FriOI GRGCYC 3 cut(s) 231, 588, 1335
Fsp4HI GCNGC 5 cut(s) 1017, 1149, 1764, 1896, 2043
FspBI CTAG 7 cut(s) 509, 603, 741, 1256, 1350, 1488, 2049
GluI GCNGC 5 cut(s) 1017, 1149, 1764, 1896, 2043
HaeIII GGCC 2 cut(s) 1148, 2169
HapII CCGG 4 cut(s) 527, 765, 1274, 1512
Hin1II CATG 6 cut(s) 751, 898, 903, 1498, 1645, 1650
HpaII CCGG 4 cut(s) 527, 765, 1274, 1512
HphI GGTGA 4 cut(s) 40, 146, 422, 2120
Hpy166II GTNNAC 5 cut(s) 997, 1222, 1744, 1969, 2101
Hpy188I TCNGA 9 cut(s) 381, 688, 712, 941, 992, 1435, 1459, 1688, 1739
Hpy8I GTNNAC 5 cut(s) 997, 1222, 1744, 1969, 2101
HpyCH4III ACNGT 6 cut(s) 89, 112, 785, 1113, 1532, 1860
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 1346, 2039
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 6 cut(s) 751, 898, 903, 1498, 1645, 1650
Ksp22I TGATCA 2 cut(s) 750, 1497
LmnI GCTCC 4 cut(s) 312, 832, 1579, 2039
Lsp1109I GCAGC 4 cut(s) 1028, 1775, 1882, 2054
LweI GCATC 5 cut(s) 493, 1150, 1240, 1897, 2187
MaeI CTAG 7 cut(s) 509, 603, 741, 1256, 1350, 1488, 2049
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 4 cut(s) 345, 456, 1086, 1833
MfeI CAATTG 1 cut(s) 2034
MflI RGATCY 3 cut(s) 712, 916, 1663
MhlI GDGCHC 3 cut(s) 231, 588, 1335
MlyI GAGTC 3 cut(s) 1002, 1749, 1988
MmeI TCCRAC 6 cut(s) 888, 964, 1635, 1711, 2062, 2172
Mph1103I ATGCAT 1 cut(s) 433
MroXI GAANNNNTTC 3 cut(s) 454, 887, 1634
MseI TTAA 4 cut(s) 495, 552, 1299, 2203
MslI CAYNNNNRTG 3 cut(s) 426, 951, 1698
MspI CCGG 4 cut(s) 527, 765, 1274, 1512
MspR9I CCNGG 9 cut(s) 408, 527, 766, 921, 1246, 1274, 1513, 1668, 2171
MunI CAATTG 1 cut(s) 2034
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 5 cut(s) 408, 921, 1246, 1668, 2171
MwoI GCNNNNNNNGC 3 cut(s) 599, 1346, 2039
NciI CCSGG 4 cut(s) 527, 766, 1274, 1513
NdeI CATATG 1 cut(s) 220
NlaIII CATG 6 cut(s) 751, 898, 903, 1498, 1645, 1650
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 2 cut(s) 898, 1645
NspV TTCGAA 1 cut(s) 2009
PceI AGGCCT 1 cut(s) 2169
PciI ACATGT 2 cut(s) 894, 1641
PctI GAATGC 1 cut(s) 433
PdmI GAANNNNTTC 3 cut(s) 454, 887, 1634
PfoI TCCNGGA 2 cut(s) 525, 1272
PkrI GCNGC 5 cut(s) 1018, 1150, 1765, 1897, 2044
PleI GAGTC 3 cut(s) 1001, 1748, 1987
PpsI GAGTC 3 cut(s) 1001, 1748, 1987
PpuMI RGGWCCY 2 cut(s) 1127, 1874
PscI ACATGT 2 cut(s) 894, 1641
PshBI ATTAAT 3 cut(s) 495, 552, 1299
Psp124BI GAGCTC 3 cut(s) 231, 588, 1335
Psp5II RGGWCCY 2 cut(s) 1127, 1874
Psp6I CCWGG 5 cut(s) 406, 919, 1244, 1666, 2169
PspGI CCWGG 5 cut(s) 406, 919, 1244, 1666, 2169
PspPI GGNCC 4 cut(s) 1127, 1146, 1874, 2145
PspPPI RGGWCCY 2 cut(s) 1127, 1874
PstI CTGCAG 4 cut(s) 441, 1018, 1765, 1900
PstNI CAGNNNCTG 2 cut(s) 1157, 1904
PsuI RGATCY 3 cut(s) 712, 916, 1663
RsaI GTAC 3 cut(s) 94, 665, 1412
RsaNI GTAC 3 cut(s) 93, 664, 1411
RseI CAYNNNNRTG 3 cut(s) 426, 951, 1698
SacI GAGCTC 3 cut(s) 231, 588, 1335
SaqAI TTAA 4 cut(s) 495, 552, 1299, 2203
SatI GCNGC 5 cut(s) 1017, 1149, 1764, 1896, 2043
Sau96I GGNCC 4 cut(s) 1127, 1146, 1874, 2145
SbfI CCTGCAGG 1 cut(s) 441
SchI GAGTC 3 cut(s) 1002, 1749, 1988
ScrFI CCNGG 9 cut(s) 408, 527, 766, 921, 1246, 1274, 1513, 1668, 2171
SdaI CCTGCAGG 1 cut(s) 441
SduI GDGCHC 3 cut(s) 231, 588, 1335
SfaNI GCATC 5 cut(s) 493, 1150, 1240, 1897, 2187
SfcI CTRYAG 4 cut(s) 437, 1014, 1761, 1896
SfuI TTCGAA 1 cut(s) 2009
SinI GGWCC 3 cut(s) 1127, 1874, 2145
SmiMI CAYNNNNRTG 3 cut(s) 426, 951, 1698
SpeI ACTAGT 3 cut(s) 508, 1255, 2048
Sse8387I CCTGCAGG 1 cut(s) 441
SseBI AGGCCT 1 cut(s) 2169
SsiI CCGC 2 cut(s) 1149, 2143
SspI AATATT 2 cut(s) 793, 1540
SspMI CTAG 7 cut(s) 509, 603, 741, 1256, 1350, 1488, 2049
SstI GAGCTC 3 cut(s) 231, 588, 1335
StuI AGGCCT 1 cut(s) 2169
StyD4I CCNGG 9 cut(s) 406, 525, 764, 919, 1244, 1272, 1511, 1666, 2169
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 6 cut(s) 89, 112, 785, 1113, 1532, 1860
TatI WGTACW 2 cut(s) 663, 1410
TauI GCSGC 1 cut(s) 1151
Tru1I TTAA 4 cut(s) 495, 552, 1299, 2203
Tru9I TTAA 4 cut(s) 495, 552, 1299, 2203
TscAI CASTG 7 cut(s) 109, 115, 178, 828, 1116, 1575, 1863
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 4 cut(s) 1016, 1763, 1895, 2042
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 9 cut(s) 129, 511, 885, 1070, 1258, 1632, 1817, 1983, 2076
TspGWI ACGGA 1 cut(s) 2201
TspRI CASTG 7 cut(s) 109, 115, 178, 828, 1116, 1575, 1863
VpaK11BI GGWCC 3 cut(s) 1127, 1874, 2145
VspI ATTAAT 3 cut(s) 495, 552, 1299
XapI RAATTY 4 cut(s) 97, 177, 395, 2177
XceI RCATGY 2 cut(s) 898, 1645
XmiI GTMKAC 3 cut(s) 996, 1743, 2100
XmnI GAANNNNTTC 3 cut(s) 454, 887, 1634
XspI CTAG 7 cut(s) 509, 603, 741, 1256, 1350, 1488, 2049
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.