Rmu_sc0013037.1_g000001
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013037.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 1214
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013037.1_g000001.1.cds

Sequence Viewer

Length: 471 bp
atgaaatttgttgtttatgttgctctgcatgctctcttgaaaactgttattggtgggatatactttaaccccttctatatttcacagcttggttacaccaaaaagcaagaggaaaggcattttcgtggtgtcatcactttggaggaatacttcacaatgccttgtcccgaatgtaatattgaagagattgaagaggaagaacctgctcctccaccaaagagttcaaaggataagaaggcaaatgggccagaaaaagcacctagtcttgcatttaagtttactagcaaggttccgtacaaaactgttctgaaagcacatagtgccgttgtgttgaaagctgagactgtggcagacaaggttgagtggataaataagatttcaaaggttatccaaccttctaaaggagcaccgaggggtgcaccatctgatggtggtcctactatgcgacagagtctttctgatggttcgctt
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

8.97

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 428
AcsI RAATTY 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 401, 428
AgsI TTSAA 6 cut(s) 40, 182, 191, 225, 334, 381
AluBI AGCT 2 cut(s) 88, 338
AluI AGCT 2 cut(s) 88, 338
Alw21I GWGCWC 2 cut(s) 409, 421
Alw26I GTCTC 1 cut(s) 335
Alw44I GTGCAC 1 cut(s) 417
AoxI GGCC 1 cut(s) 245
ApaLI GTGCAC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 245, 434
AvaII GGWCC 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 421
Bbv12I GWGCWC 2 cut(s) 409, 421
BccI CCATC 3 cut(s) 422, 430, 455
BceAI ACGGC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 261, 282
BfuAI ACCTGC 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 2 cut(s) 245, 434
BmiI GGNNCC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 428
BseDI CCNNGG 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 401, 428
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 421
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 409, 421
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 401, 428
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 409, 421
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 410
Bst4CI ACNGT 3 cut(s) 46, 304, 346
Bst6I CTCTTC 2 cut(s) 177, 186
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 399
BstMAI GTCTC 1 cut(s) 335
BstMWI GCNNNNNNNGC 2 cut(s) 29, 320
BstNSI RCATGY 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 247
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 245, 434
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 88, 247, 338
CviKI_1 RGCY 3 cut(s) 88, 247, 338
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 339
DraIII CACNNNGTG 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 177, 186
EarI CTCTTC 2 cut(s) 177, 186
Eco47I GGWCC 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 399
FaeI CATG 1 cut(s) 32
FaiI YATR 6 cut(s) 18, 30, 61, 78, 318, 443
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 28
FspBI CTAG 2 cut(s) 261, 282
HaeIII GGCC 1 cut(s) 247
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 451
Hpy166II GTNNAC 2 cut(s) 279, 419
Hpy188I TCNGA 3 cut(s) 309, 427, 460
Hpy188III TCNNGA 2 cut(s) 37, 167
Hpy8I GTNNAC 2 cut(s) 279, 419
HpyAV CCTTC 3 cut(s) 82, 229, 405
HpyCH4III ACNGT 3 cut(s) 46, 304, 346
HpyCH4V TGCA 3 cut(s) 28, 269, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 320
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 1 cut(s) 32
LmnI GCTCC 2 cut(s) 211, 404
LpnPI CCDG 2 cut(s) 216, 261
MaeI CTAG 2 cut(s) 261, 282
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 3 cut(s) 194, 203, 209
MhlI GDGCHC 2 cut(s) 409, 421
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 5 cut(s) 103, 136, 187, 219, 405
MseI TTAA 2 cut(s) 66, 273
MslI CAYNNNNRTG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 29, 320
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 291
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 450
PflMI CCANNNNNTGG 1 cut(s) 428
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 245, 434
PsyI GACNNNGTC 1 cut(s) 450
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 66, 273
Sau96I GGNCC 2 cut(s) 245, 434
SchI GAGTC 1 cut(s) 460
SduI GDGCHC 2 cut(s) 409, 421
SetI ASST 8 cut(s) 90, 205, 262, 291, 340, 360, 387, 397
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 123
SphI GCATGC 1 cut(s) 32
Sse9I AATT 1 cut(s) 5
SspI AATATT 1 cut(s) 178
SspMI CTAG 2 cut(s) 261, 282
TaaI ACNGT 3 cut(s) 46, 304, 346
TasI AATT 1 cut(s) 5
Tru1I TTAA 2 cut(s) 66, 273
Tru9I TTAA 2 cut(s) 66, 273
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 450
Van91I CCANNNNNTGG 1 cut(s) 428
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 32
XspI CTAG 2 cut(s) 261, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.