Rmu_sc0013275.1_g000003
BHLH Family

basic helix-loop-helix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013275.1
N/A
Physical Location & Seq
Reverse (-)
13457 .. 13807
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013275.1_g000003.1.cds

Sequence Viewer

Length: 258 bp
atgttgacggggacatctctagaagtgtcgataatagagagcgatggattgttggagctccaatgcccgtacagagaagggttattacttgatgtcatgcaaaccctacgagatctccgaattgagaccacggttgtgcaatcctcgttgaatagtggcaccttcgtagctgagctaagggccaaggtgggcaagaaaacaaccattacagaagtgaagagggcagtaaatcaagtgataccccaatctgactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

85

Amino Acids

9.34

Weight (kDa)

4.99

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 151
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 3 cut(s) 58, 170, 175
AluI AGCT 3 cut(s) 58, 170, 175
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
Bbv12I GWGCWC 1 cut(s) 60
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 129, 183
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
BseDI CCNNGG 2 cut(s) 129, 183
BseMII CTCAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 129, 183
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 171, 176
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 58, 170, 175, 182
CviKI_1 RGCY 4 cut(s) 58, 170, 175, 182
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 171, 176
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 119, 250
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 71, 172
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 100, 139
HpyF3I CTNAG 2 cut(s) 171, 176
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 55, 63
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 229
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 154, 213
MseI TTAA 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 134
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 160
OliI CACNNNNGTG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 256
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 60
SetI ASST 5 cut(s) 60, 164, 172, 177, 189
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 60
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 120
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 19
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.