Rmu_sc0013552.1_g000006

mitogen-activated protein kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013552.1
N/A
Physical Location & Seq
Reverse (-)
20198 .. 21071
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013552.1_g000006.1.cds

Sequence Viewer

Length: 372 bp
atgaagacgaagacgccattgaatctgaagaagcagctcaagctctctgttcctgctcaagaaaccaacatcacctcattcttgactgccagcggcacatttcatgatgggggtttgcttctgaaccagaaagggttgcggcttatcaccgaagaaaaggaggtccgaagttctgttgttaataaccaattggcaatcatggtagtcttcctttataacccagttatcttcaaaaccctgataaccaatctcgctttctttcctattttgatcaccaccaaccttagcttcttgaagacccatgaagaagatgaagaacaagaacaagtagcagaagatcttagacttggtgttgaagaagtccggagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000165 GO:0000187 GO:0000280 GO:0000910 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007346 GO:0008150 GO:0008152 GO:0009524 GO:0009653 GO:0009791 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010200 GO:0010243 GO:0010311 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0033206 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045859 GO:0045860 GO:0045937 GO:0048232 GO:0048285 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051301 GO:0051321 GO:0051338 GO:0051347 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0061640 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533 GO:1903046 GO:1905392 GO:1905393
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.89

Weight (kDa)

5.69

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 363
AciI CCGC 2 cut(s) 93, 139
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 14
AgsI TTSAA 4 cut(s) 22, 232, 295, 356
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 272, 304
AluBI AGCT 4 cut(s) 37, 43, 288, 369
AluI AGCT 4 cut(s) 37, 43, 288, 369
Aor13HI TCCGGA 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 64, 139, 265
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 4 cut(s) 11, 17, 199, 302
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 101
BclI TGATCA 1 cut(s) 270
BfaI CTAG 1 cut(s) 370
BglII AGATCT 1 cut(s) 337
BisI GCNGC 3 cut(s) 35, 94, 140
BlsI GCNGC 3 cut(s) 36, 95, 141
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 4 cut(s) 11, 17, 199, 302
Bpu10I CCTNAGC 1 cut(s) 284
BpuEI CTTGAG 2 cut(s) 23, 42
BsaHI GRCGYC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 363
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 270, 337
BspACI CCGC 2 cut(s) 93, 139
BspEI TCCGGA 1 cut(s) 363
BspHI TCATGA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 221
BssMI GATC 2 cut(s) 270, 337
BssNI GRCGYC 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 284, 341
BstKTI GATC 2 cut(s) 273, 340
BstMBI GATC 2 cut(s) 270, 337
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 4 cut(s) 11, 17, 199, 302
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 91
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 22
CviAII CATG 3 cut(s) 104, 199, 302
CviJI RGCY 5 cut(s) 37, 43, 142, 288, 369
CviKI_1 RGCY 5 cut(s) 37, 43, 142, 288, 369
DdeI CTNAG 2 cut(s) 284, 341
DpnI GATC 2 cut(s) 272, 339
DpnII GATC 2 cut(s) 270, 337
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 47
FaeI CATG 3 cut(s) 107, 202, 305
FaiI YATR 4 cut(s) 105, 200, 216, 303
FatI CATG 3 cut(s) 103, 198, 301
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 35, 94, 140
Fsp4HI GCNGC 3 cut(s) 35, 94, 140
FspBI CTAG 1 cut(s) 370
GluI GCNGC 3 cut(s) 35, 94, 140
HapII CCGG 1 cut(s) 364
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 3 cut(s) 107, 202, 305
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 364
HphI GGTGA 3 cut(s) 64, 139, 265
Hpy188I TCNGA 3 cut(s) 27, 123, 167
Hpy188III TCNNGA 5 cut(s) 59, 82, 104, 292, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 284, 341
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 107, 202, 305
Kpn2I TCCGGA 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 2 cut(s) 270, 337
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 5 cut(s) 66, 103, 140, 234, 251
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 370
MalI GATC 2 cut(s) 272, 339
MboI GATC 2 cut(s) 270, 337
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 337
MluCI AATT 1 cut(s) 188
MnlI CCTC 2 cut(s) 85, 154
MroI TCCGGA 1 cut(s) 363
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 2 cut(s) 270, 337
NlaIII CATG 3 cut(s) 107, 202, 305
PagI TCATGA 1 cut(s) 103
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 36, 95, 141
PsiI TTATAA 1 cut(s) 216
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 337
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 35, 94, 140
Sau3AI GATC 2 cut(s) 270, 337
Sau96I GGNCC 1 cut(s) 163
SetI ASST 7 cut(s) 39, 45, 77, 165, 285, 290, 371
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 38, 57
SmoI CTYRAG 2 cut(s) 38, 57
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 93, 139
SspMI CTAG 1 cut(s) 370
TasI AATT 1 cut(s) 188
TauI GCSGC 2 cut(s) 96, 142
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 17, 92, 318, 327
VpaK11BI GGWCC 1 cut(s) 163
XspI CTAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.