Rmu_sc0014430.1_g000009

Protein kinase PINOID-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014430.1
N/A
Physical Location & Seq
Forward (+)
34457 .. 35032
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014430.1_g000009.1.cds

Sequence Viewer

Length: 576 bp
atgttagagcttggtccgattactactactactctcgcgcgtgattcagacagttcaatgagtagtgacacctgtagcagttttagccgcctctccttcgacgcaaccaccaccttaaccgccgcaaccgacttcttcggcaccgagaatctcgccctcaagccgcaccgctcctccgacttcgcctactccgtcattcgctccaagaaatcctccctcacttaccgcgacttccggctgcaccgccgcatcggctccggcgacatcggcaccgtctacctctgcagcctccgcagtctcgactccgactcatcatcatcatcctcaacctcatgcgtctacgccatgaaagtcgtcgacaaggaggccttggccctcaagaagaaggagcccagagccgagatggagcgcaagatcctcaaaatgcttgaccaccctttcctccccacactttacgccgagttcgaggcctcgcatttctcctgcatcgtcatggagtactgctccggtggcgacttgcactccctccgccataaacagcctaaccgccgcttctctctcagctccgcaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009986 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010154 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0080167 GO:0090558 GO:0090567 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

191

Amino Acids

21.31

Weight (kDa)

8.81

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 140, 269
AccBSI CCGCTC 1 cut(s) 171
AccI GTMKAC 3 cut(s) 276, 339, 357
AccII CGCG 3 cut(s) 38, 40, 228
AclWI GGATC 1 cut(s) 409
AfaI GTAC 1 cut(s) 500
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 2 cut(s) 10, 564
AluI AGCT 2 cut(s) 10, 564
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 409
AoxI GGCC 3 cut(s) 366, 372, 468
ApeKI GCWGC 2 cut(s) 238, 285
AspLEI GCGC 2 cut(s) 40, 411
AspS9I GGNCC 2 cut(s) 14, 373
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 2 cut(s) 140, 269
BanII GRGCYC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 225, 297
BccI CCATC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 2 cut(s) 73, 283
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 7 cut(s) 88, 123, 164, 239, 247, 286, 550
BlsI GCNGC 7 cut(s) 89, 124, 165, 240, 248, 287, 551
BmcAI AGTACT 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 14, 373
BmiI GGNNCC 4 cut(s) 142, 256, 271, 390
BmsI GCATC 2 cut(s) 258, 495
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpuEI CTTGAG 2 cut(s) 143, 362
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 506
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 506, 536
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 225, 297
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 38, 40, 228
BshFI GGCC 3 cut(s) 368, 374, 470
BshNI GGYRCC 2 cut(s) 140, 269
BsiSI CCGG 3 cut(s) 235, 258, 507
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 3 cut(s) 368, 374, 470
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 1 cut(s) 414
BspANI GGCC 3 cut(s) 368, 374, 470
BspCNI CTCAG 1 cut(s) 573
BspFNI CGCG 3 cut(s) 38, 40, 228
BspLI GGNNCC 4 cut(s) 142, 256, 271, 390
BspMAI CTGCAG 1 cut(s) 287
BspPI GGATC 1 cut(s) 409
BspT107I GGYRCC 2 cut(s) 140, 269
BsrBI CCGCTC 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 53, 274
BstDEI CTNAG 1 cut(s) 560
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 3 cut(s) 38, 40, 228
BstHHI GCGC 2 cut(s) 40, 411
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 5 cut(s) 84, 252, 267, 291, 510
BstSFI CTRYAG 2 cut(s) 73, 283
BstUI CGCG 3 cut(s) 38, 40, 228
BstV1I GCAGC 2 cut(s) 225, 297
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 3 cut(s) 368, 374, 470
BtsCI GGATG 1 cut(s) 320
CfoI GCGC 2 cut(s) 40, 411
Cfr13I GGNCC 2 cut(s) 14, 373
CseI GACGC 2 cut(s) 110, 325
Csp6I GTAC 1 cut(s) 499
CviAII CATG 3 cut(s) 333, 346, 493
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 1 cut(s) 560
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
EciI GGCGGA 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 2 cut(s) 368, 470
Eco24I GRGCYC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 336, 349, 496
FaiI YATR 4 cut(s) 334, 347, 494, 534
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 3 cut(s) 332, 345, 492
FblI GTMKAC 3 cut(s) 276, 339, 357
Fnu4HI GCNGC 7 cut(s) 88, 123, 164, 239, 247, 286, 550
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 7 cut(s) 88, 123, 164, 239, 247, 286, 550
GlaI GCGC 2 cut(s) 39, 410
GluI GCNGC 7 cut(s) 88, 123, 164, 239, 247, 286, 550
HaeIII GGCC 3 cut(s) 368, 374, 470
HapII CCGG 3 cut(s) 235, 258, 507
HgaI GACGC 2 cut(s) 110, 325
HhaI GCGC 2 cut(s) 40, 411
Hin1II CATG 3 cut(s) 336, 349, 496
Hin6I GCGC 2 cut(s) 38, 409
HinP1I GCGC 2 cut(s) 38, 409
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 4 cut(s) 44, 148, 302, 308
HpaII CCGG 3 cut(s) 235, 258, 507
Hpy166II GTNNAC 3 cut(s) 277, 340, 358
Hpy188I TCNGA 4 cut(s) 18, 49, 178, 307
Hpy188III TCNNGA 2 cut(s) 299, 379
Hpy8I GTNNAC 3 cut(s) 277, 340, 358
Hpy99I CGWCG 2 cut(s) 104, 359
HpyAV CCTTC 2 cut(s) 106, 379
HpyCH4III ACNGT 2 cut(s) 53, 274
HpyCH4V TGCA 4 cut(s) 241, 285, 486, 520
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 252, 267, 291, 510
HpyF3I CTNAG 1 cut(s) 560
Hsp92II CATG 3 cut(s) 336, 349, 496
HspAI GCGC 2 cut(s) 38, 409
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 7 cut(s) 176, 206, 260, 388, 406, 509, 569
LpnPI CCDG 6 cut(s) 85, 248, 271, 406, 496, 520
Lsp1109I GCAGC 2 cut(s) 225, 297
LweI GCATC 2 cut(s) 258, 495
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 416
MbiI CCGCTC 1 cut(s) 171
MboI GATC 1 cut(s) 414
MboII GAAGA 2 cut(s) 127, 394
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 393
MlyI GAGTC 2 cut(s) 296, 302
MmeI TCCRAC 2 cut(s) 201, 330
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 3 cut(s) 235, 258, 507
MvnI CGCG 3 cut(s) 38, 40, 228
MwoI GCNNNNNNNGC 5 cut(s) 84, 252, 267, 291, 510
NdeII GATC 1 cut(s) 414
NlaIII CATG 3 cut(s) 336, 349, 496
NlaIV GGNNCC 4 cut(s) 142, 256, 271, 390
NmeAIII GCCGAG 2 cut(s) 424, 484
NmuCI GTSAC 1 cut(s) 65
PceI AGGCCT 2 cut(s) 368, 470
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 258, 462
PfeI GAWTC 2 cut(s) 44, 148
PkrI GCNGC 7 cut(s) 89, 124, 165, 240, 248, 287, 551
PleI GAGTC 2 cut(s) 296, 302
PpsI GAGTC 2 cut(s) 296, 302
PspN4I GGNNCC 4 cut(s) 142, 256, 271, 390
PspPI GGNCC 2 cut(s) 14, 373
PstI CTGCAG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 1 cut(s) 491
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 7 cut(s) 88, 123, 164, 239, 247, 286, 550
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 2 cut(s) 14, 373
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 2 cut(s) 296, 302
SduI GDGCHC 1 cut(s) 393
SetI ASST 7 cut(s) 12, 74, 116, 282, 332, 566, 575
SfaNI GCATC 2 cut(s) 258, 495
SfcI CTRYAG 2 cut(s) 73, 283
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 158, 377
SmoI CTYRAG 2 cut(s) 158, 377
SseBI AGGCCT 2 cut(s) 368, 470
StuI AGGCCT 2 cut(s) 368, 470
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 53, 274
TaqI TCGA 4 cut(s) 99, 300, 357, 465
TatI WGTACW 1 cut(s) 498
TauI GCSGC 5 cut(s) 90, 125, 166, 249, 552
TfiI GAWTC 2 cut(s) 44, 148
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 238, 285
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 3 cut(s) 276, 339, 357
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.