Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015642.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1675 .. 2409

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015642.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggctgaggcagcatacacagtggcatctgatagtgaaaccagtctggaggagaaatcctcatgcacctttcctgaaacaacagttggaattgatattggtacctcacaatgcagggttgcaatctggaatggctcccaggttgagatccttaaaaacaatcatgatatattatctggagctgcaatattcaacatgaaaaacttaattggccgagttgacacggatccagttgtccactctagcaaaagccttccatttctagtacaaacattggacattggtgtccgtccatttattgcagccttggttggaaatttctggagatccaccactcctgaagaagttctggcaatatttttggtggaacttagggaaatggcagaaattcagttaaggcggcccataaaaaatgttgttatgactgtgccagtttcattcagccgattccagttgactcggattgagagagcatgtgccatggctggccttcatatcctgaaactgatgccagaaccaactgcagtggcattgttatataccttatatacaaaacaaaggggatttcagtcaacagataggaatgttctaatcttcaatatgggtgcaggatactgtgatgttgccataagtgtgacagctaaaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0042493 GO:0042542 GO:0046677 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70

Protein Analysis

216

Amino Acids

23.8

Weight (kDa)

6.31

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	4 cut(s)	142, 221, 234, 321
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	316, 387
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	103, 267
AgsI	TTSAA	2 cut(s)	193, 598
AjnI	CCWGG	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	2 cut(s)	182, 641
AluI	AGCT	2 cut(s)	182, 641
AlwI	GGATC	4 cut(s)	142, 221, 234, 321
AoxI	GGCC	3 cut(s)	211, 401, 487
ApeKI	GCWGC	3 cut(s)	11, 182, 302
ApoI	RAATTY	2 cut(s)	316, 387
Asp700I	GAANNNNTTC	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	23, 169, 314
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	605
BfaI	CTAG	2 cut(s)	243, 263
BfmI	CTRYAG	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	4 cut(s)	12, 183, 303, 401
BlsI	GCNGC	4 cut(s)	13, 184, 304, 402
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	103, 136, 228
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	35, 498
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	3 cut(s)	68, 198, 343
Bpu10I	CCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	138, 306, 480
Bse1I	ACTGG	4 cut(s)	42, 230, 431, 451
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	138, 306, 480
BseNI	ACTGG	4 cut(s)	42, 230, 431, 451
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	23, 169, 314
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	213, 403, 489
BshNI	GGYRCC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	213, 403, 489
Bsp143I	GATC	3 cut(s)	147, 226, 326
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	3 cut(s)	213, 403, 489
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	103, 136, 228
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	4 cut(s)	142, 221, 234, 321
BspT107I	GGYRCC	1 cut(s)	101
BsrI	ACTGG	4 cut(s)	42, 230, 431, 451
BssECI	CCNNGG	3 cut(s)	138, 306, 480
BssMI	GATC	3 cut(s)	147, 226, 326
BssT1I	CCWWGG	2 cut(s)	306, 480
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	4 cut(s)	22, 85, 427, 617
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	2 cut(s)	6, 371
BstDSI	CCRYGG	1 cut(s)	480
BstKTI	GATC	3 cut(s)	150, 229, 329
BstMBI	GATC	3 cut(s)	147, 226, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	23, 169, 314
BstX2I	RGATCY	3 cut(s)	147, 226, 326
BstYI	RGATCY	3 cut(s)	147, 226, 326
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	213, 403, 489
BtgI	CCRYGG	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	27, 531
Cac8I	GCNNGC	1 cut(s)	487
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	102, 266
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	5 cut(s)	63, 164, 196, 474, 481
CviQI	GTAC	2 cut(s)	102, 266
DdeI	CTNAG	2 cut(s)	6, 371
DpnI	GATC	3 cut(s)	149, 228, 328
DpnII	GATC	3 cut(s)	147, 226, 326
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	306, 480
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	306, 480
ErhI	CCWWGG	2 cut(s)	306, 480
FaeI	CATG	5 cut(s)	66, 167, 199, 477, 484
FatI	CATG	5 cut(s)	62, 163, 195, 473, 480
Fnu4HI	GCNGC	4 cut(s)	12, 183, 303, 401
Fsp4HI	GCNGC	4 cut(s)	12, 183, 303, 401
FspBI	CTAG	2 cut(s)	243, 263
GluI	GCNGC	4 cut(s)	12, 183, 303, 401
GsuI	CTGGAG	3 cut(s)	68, 198, 343
HaeIII	GGCC	3 cut(s)	213, 403, 489
Hin1II	CATG	5 cut(s)	66, 167, 199, 477, 484
HincII	GTYRAC	3 cut(s)	220, 456, 573
HindII	GTYRAC	3 cut(s)	220, 456, 573
HinfI	GANTC	2 cut(s)	447, 457
Hpy166II	GTNNAC	4 cut(s)	220, 238, 456, 573
Hpy188I	TCNGA	2 cut(s)	31, 462
Hpy188III	TCNNGA	8 cut(s)	47, 74, 127, 164, 177, 322, 338, 499
Hpy8I	GTNNAC	4 cut(s)	220, 238, 456, 573
HpyAV	CCTTC	2 cut(s)	263, 500
HpyCH4III	ACNGT	4 cut(s)	22, 85, 427, 617
HpyCH4V	TGCA	7 cut(s)	66, 114, 122, 185, 302, 524, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	6, 371
Hsp92II	CATG	5 cut(s)	66, 167, 199, 477, 484
KpnI	GGTACC	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	147, 226, 326
LmnI	GCTCC	2 cut(s)	140, 179
Lsp1109I	GCAGC	3 cut(s)	23, 169, 314
LweI	GCATC	2 cut(s)	35, 498
MaeI	CTAG	2 cut(s)	243, 263
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	3 cut(s)	149, 228, 328
MboI	GATC	3 cut(s)	147, 226, 326
MboII	GAAGA	2 cut(s)	353, 586
MflI	RGATCY	3 cut(s)	147, 226, 326
MluCI	AATT	4 cut(s)	90, 207, 316, 387
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	67, 292
MnlI	CCTC	3 cut(s)	43, 70, 115
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	153, 206, 395
MslI	CAYNNNNRTG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	147, 226, 326
NlaIII	CATG	5 cut(s)	66, 167, 199, 477, 484
NlaIV	GGNNCC	3 cut(s)	103, 136, 228
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	634
NspI	RCATGY	1 cut(s)	477
PagI	TCATGA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	13, 184, 304, 402
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	103, 136, 228
PspPI	GGNCC	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	3 cut(s)	147, 226, 326
RsaI	GTAC	2 cut(s)	103, 267
RsaNI	GTAC	2 cut(s)	102, 266
RseI	CAYNNNNRTG	1 cut(s)	632
SaqAI	TTAA	3 cut(s)	153, 206, 395
SatI	GCNGC	4 cut(s)	12, 183, 303, 401
Sau3AI	GATC	3 cut(s)	147, 226, 326
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	7 cut(s)	71, 107, 144, 184, 545, 643, 650
SfaNI	GCATC	2 cut(s)	35, 498
SfcI	CTRYAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	90, 207, 316, 387
SsiI	CCGC	1 cut(s)	400
SspI	AATATT	2 cut(s)	189, 357
SspMI	CTAG	2 cut(s)	243, 263
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	306, 480
TaaI	ACNGT	4 cut(s)	22, 85, 427, 617
TasI	AATT	4 cut(s)	90, 207, 316, 387
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	447
Tru1I	TTAA	3 cut(s)	153, 206, 395
Tru9I	TTAA	3 cut(s)	153, 206, 395
TscAI	CASTG	2 cut(s)	27, 531
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	3 cut(s)	11, 182, 302
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	3 cut(s)	212, 426, 482
TspGWI	ACGGA	2 cut(s)	239, 278
TspRI	CASTG	2 cut(s)	27, 531
XapI	RAATTY	2 cut(s)	316, 387
XceI	RCATGY	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	243, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.