Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020101.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 391

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

cctctacgggacgacgccgtttaaggggaagagccggaaggagacattccggaacgtgctgacgaagacgccggagttcgttgggaaacggacggcgctgacggacttgatcgaacggctgctgcacaaggaccccaccaggcggttggggtacgtgagaggagcgtgcgagatcaaagagcatgagttttttcgcggggtgaggtgggacctactaacggaggtgtcacgggctccgtttattccgccgagggaggaggacggagacgtaacggagagcagggccgcctcggcgagatgtggggcgagcgtgagagagtatttccaaaagttacgggctcctccgccgtcaatgccgccgtcgccggattgtcagttagcggagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

9.33

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	7 cut(s)	143, 196, 246, 286, 345, 357, 381
AcyI	GRCGYC	2 cut(s)	15, 69
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	24, 142, 218
AjnI	CCWGG	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	36, 259
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	119, 122
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	131, 209, 283
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	131, 209
BanII	GRGCYC	2 cut(s)	236, 341
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	106, 109
BceAI	ACGGC	5 cut(s)	2, 109, 132, 332, 344
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	36, 259
BfoI	RGCGCY	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	4 cut(s)	120, 123, 286, 357
BlsI	GCNGC	4 cut(s)	121, 124, 287, 358
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	131, 209
BmgT120I	GGNCC	3 cut(s)	131, 209, 283
BmiI	GGNNCC	4 cut(s)	133, 210, 235, 340
BmrFI	CCNGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	155
BsaHI	GRCGYC	2 cut(s)	15, 69
BsaJI	CCNNGG	2 cut(s)	249, 289
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 142, 218
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	249, 289
BseLI	CCNNNNNNNGG	3 cut(s)	24, 142, 218
BseRI	GAGGAG	3 cut(s)	175, 270, 331
BseXI	GCAGC	2 cut(s)	106, 109
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	285
BsiSI	CCGG	4 cut(s)	35, 50, 72, 366
BslFI	GGGAC	2 cut(s)	23, 222
BslI	CCNNNNNNNGG	3 cut(s)	24, 142, 218
BsmAI	GTCTC	2 cut(s)	36, 259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	23, 222
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	236, 341
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	109, 172
BspACI	CCGC	7 cut(s)	143, 196, 246, 286, 345, 357, 381
BspANI	GGCC	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	4 cut(s)	133, 210, 235, 340
BspQI	GCTCTTC	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	249, 289
BssMI	GATC	2 cut(s)	109, 172
BssNI	GRCGYC	2 cut(s)	15, 69
Bst2UI	CCWGG	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	2 cut(s)	15, 69
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	167, 308
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	112, 175
BstMAI	GTCTC	2 cut(s)	36, 259
BstMBI	GATC	2 cut(s)	109, 172
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 353, 362
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	106, 109
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	167, 308
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	131, 209, 283
CseI	GACGC	2 cut(s)	23, 77
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	5 cut(s)	34, 119, 234, 285, 339
CviKI_1	RGCY	5 cut(s)	34, 119, 234, 285, 339
CviQI	GTAC	1 cut(s)	152
DpnI	GATC	2 cut(s)	111, 174
DpnII	GATC	2 cut(s)	109, 172
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	2 cut(s)	235, 334
Eco24I	GRGCYC	2 cut(s)	236, 341
Eco47I	GGWCC	2 cut(s)	131, 209
EcoO109I	RGGNCCY	2 cut(s)	131, 209
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	236, 341
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	186
FaiI	YATR	1 cut(s)	184
FaqI	GGGAC	2 cut(s)	23, 222
FatI	CATG	1 cut(s)	182
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	120, 123, 286, 357
FriOI	GRGCYC	2 cut(s)	236, 341
Fsp4HI	GCNGC	4 cut(s)	120, 123, 286, 357
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	4 cut(s)	120, 123, 286, 357
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	4 cut(s)	35, 50, 72, 366
HgaI	GACGC	2 cut(s)	23, 77
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	2 cut(s)	15, 69
Hin1II	CATG	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HpaII	CCGG	4 cut(s)	35, 50, 72, 366
HphI	GGTGA	1 cut(s)	212
Hpy188III	TCNNGA	1 cut(s)	50
Hpy99I	CGWCG	2 cut(s)	17, 365
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	55, 154, 268
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 353, 362
HpySE526I	ACGT	3 cut(s)	55, 154, 268
Hsp92I	GRCGYC	2 cut(s)	15, 69
Hsp92II	CATG	1 cut(s)	186
HspAI	GCGC	1 cut(s)	96
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	109, 172
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	3 cut(s)	162, 239, 344
LpnPI	CCDG	7 cut(s)	48, 63, 85, 125, 152, 266, 379
Lsp1109I	GCAGC	2 cut(s)	106, 109
MaeII	ACGT	3 cut(s)	55, 154, 268
MaeIII	GTNAC	3 cut(s)	226, 269, 331
MalI	GATC	2 cut(s)	111, 174
MboI	GATC	2 cut(s)	109, 172
MboII	GAAGA	2 cut(s)	41, 77
MhlI	GDGCHC	2 cut(s)	236, 341
MnlI	CCTC	9 cut(s)	12, 153, 196, 215, 244, 248, 251, 299, 352
MroI	TCCGGA	1 cut(s)	49
MseI	TTAA	1 cut(s)	22
MspI	CCGG	4 cut(s)	35, 50, 72, 366
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	291, 353, 362
NdeII	GATC	2 cut(s)	109, 172
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	4 cut(s)	133, 210, 235, 340
NmeAIII	GCCGAG	2 cut(s)	270, 274
NmuCI	GTSAC	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	24
PkrI	GCNGC	4 cut(s)	121, 124, 287, 358
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	2 cut(s)	131, 209
Psp5II	RGGWCCY	2 cut(s)	131, 209
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	4 cut(s)	133, 210, 235, 340
PspPI	GGNCC	3 cut(s)	131, 209, 283
PspPPI	RGGWCCY	2 cut(s)	131, 209
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	22
SatI	GCNGC	4 cut(s)	120, 123, 286, 357
Sau3AI	GATC	2 cut(s)	109, 172
Sau96I	GGNCC	3 cut(s)	131, 209, 283
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	236, 341
SetI	ASST	6 cut(s)	58, 157, 207, 214, 226, 271
SinI	GGWCC	2 cut(s)	131, 209
SsiI	CCGC	7 cut(s)	143, 196, 246, 286, 345, 357, 381
StyD4I	CCNGG	1 cut(s)	138
TaiI	ACGT	3 cut(s)	58, 157, 271
TaqI	TCGA	1 cut(s)	112
TauI	GCSGC	2 cut(s)	288, 359
Tru1I	TTAA	1 cut(s)	22
Tru9I	TTAA	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	119, 122
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	6 cut(s)	104, 117, 226, 234, 277, 288
VpaK11BI	GGWCC	2 cut(s)	131, 209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.