Rmu_sc0020508.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020508.1
N/A
Physical Location & Seq
Forward (+)
1 .. 996
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020508.1_g000001.1.cds

Sequence Viewer

Length: 346 bp
ggattttatgtggaacgaaataagtggaagtataccaaaggagataggcaacattacatctttggaactcttactcctgaatggaaaccaattgtcaggtcccctccctgaagagcttggttatcttccgaacttggacagaatacaaattgaccagaaccacatttcaggaccaatacctaaatcattcgcatatttgaacaaaacgaagcactttcacatgaacaacaattcaattagcgggcaacttccatctgagctttccagattaccaaaacttgtccacattcttcttgacaacaacaacttgtctgggtatcttccaccagagttctcagatctgccg

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

5.16

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 32
AciI CCGC 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 200, 235
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 2 cut(s) 116, 260
AluI AGCT 2 cut(s) 116, 260
AspS9I GGNCC 2 cut(s) 99, 171
AvaII GGWCC 2 cut(s) 99, 171
BccI CCATC 1 cut(s) 260
BglII AGATCT 1 cut(s) 338
Bme18I GGWCC 2 cut(s) 99, 171
BmgT120I GGNCC 2 cut(s) 99, 171
BmiI GGNNCC 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
BseMII CTCAG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 106
BssMI GATC 1 cut(s) 338
BssNAI GTATAC 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 256, 335
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BstZ17I GTATAC 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 99, 171
CviAII CATG 1 cut(s) 221
CviJI RGCY 2 cut(s) 116, 260
CviKI_1 RGCY 2 cut(s) 116, 260
DdeI CTNAG 2 cut(s) 256, 335
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 99, 171
Eco57I CTGAAG 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 99
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 9, 33, 194, 222
FaqI GGGAC 1 cut(s) 85
FatI CATG 1 cut(s) 220
FauI CCCGC 1 cut(s) 234
FblI GTMKAC 1 cut(s) 32
Hin1II CATG 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 33, 284
Hpy188I TCNGA 3 cut(s) 130, 257, 338
Hpy188III TCNNGA 4 cut(s) 77, 169, 265, 294
Hpy8I GTNNAC 2 cut(s) 33, 284
HpyF3I CTNAG 2 cut(s) 256, 335
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 338
LguI GCTCTTC 1 cut(s) 106
LpnPI CCDG 8 cut(s) 82, 90, 121, 154, 168, 278, 298, 340
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 4 cut(s) 117, 123, 282, 312
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 338
MluCI AATT 4 cut(s) 90, 148, 230, 235
MnlI CCTC 1 cut(s) 114
MunI CAATTG 1 cut(s) 90
NdeII GATC 1 cut(s) 338
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 2 cut(s) 99, 171
PspPPI RGGWCCY 1 cut(s) 99
PsuI RGATCY 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 106
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 2 cut(s) 99, 171
SetI ASST 4 cut(s) 101, 118, 182, 262
SinI GGWCC 2 cut(s) 99, 171
Sse9I AATT 4 cut(s) 90, 148, 230, 235
SsiI CCGC 1 cut(s) 241
TasI AATT 4 cut(s) 90, 148, 230, 235
TspDTI ATGAA 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 99, 171
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.