Rmu_sc0021533.1_g000002

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021533.1
N/A
Physical Location & Seq
Reverse (-)
2560 .. 2895
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021533.1_g000002.1.cds

Sequence Viewer

Length: 336 bp
atgtatggctttcatcagtccacaaaaggtggccctgatgatcagcagcttattcaacgacagaagacttcatctttggtcgatatatctacgacatttggccgagaagaagaaaaacatatgttgttgaacaagttgttgagagagagtagccgagaagaggggcggttccttctcattcctattgtagggatgggagggatgggcaaaacaactcttgcccaattagcttataatgatgaaaggttacaaaccattttcataagaaagtatgggtttgtgtctcgagcccttttgacgagattaagattgccagagcgatcattgagagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.77

Weight (kDa)

10.07

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AciI CCGC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 160, 188
AgsI TTSAA 2 cut(s) 56, 130
AluBI AGCT 2 cut(s) 49, 230
AluI AGCT 2 cut(s) 49, 230
Alw26I GTCTC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 2 cut(s) 31, 100
ApeKI GCWGC 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspS9I GGNCC 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 285
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 187, 196
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 188
BseGI GGATG 2 cut(s) 198, 207
BseLI CCNNNNNNNGG 2 cut(s) 160, 188
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 33, 102
BsiHKCI CYCGRG 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 160, 188
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 2 cut(s) 33, 102
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 40, 320
BspACI CCGC 1 cut(s) 166
BspANI GGCC 2 cut(s) 33, 102
BspLI GGNNCC 1 cut(s) 170
BssMI GATC 2 cut(s) 40, 320
Bst6I CTCTTC 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 198, 207
BstKTI GATC 2 cut(s) 43, 323
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 40, 320
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 33, 102
BtsCI GGATG 2 cut(s) 198, 207
Cfr13I GGNCC 1 cut(s) 32
CviJI RGCY 7 cut(s) 9, 33, 49, 102, 153, 230, 290
CviKI_1 RGCY 7 cut(s) 9, 33, 49, 102, 153, 230, 290
DpnI GATC 2 cut(s) 42, 322
DpnII GATC 2 cut(s) 40, 320
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 292
FaiI YATR 7 cut(s) 6, 86, 120, 122, 234, 263, 273
FauNDI CATATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 2 cut(s) 205, 214
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 334
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 33, 102
HinfI GANTC 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 40, 320
LpnPI CCDG 2 cut(s) 48, 327
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 246
MalI GATC 2 cut(s) 42, 322
MboI GATC 2 cut(s) 40, 320
MboII GAAGA 4 cut(s) 76, 119, 122, 170
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 1 cut(s) 224
MnlI CCTC 2 cut(s) 154, 191
MseI TTAA 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeI CATATG 1 cut(s) 120
NdeII GATC 2 cut(s) 40, 320
NlaIV GGNNCC 1 cut(s) 170
NmeAIII GCCGAG 2 cut(s) 128, 179
PaeR7I CTCGAG 1 cut(s) 285
PkrI GCNGC 1 cut(s) 48
PsiI TTATAA 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 2 cut(s) 40, 320
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 292
SetI ASST 4 cut(s) 31, 51, 232, 248
Sfr274I CTCGAG 1 cut(s) 285
SgeI CNNG 9 cut(s) 47, 116, 145, 167, 230, 297, 299, 312, 326
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 166
SspMI CTAG 1 cut(s) 334
TaqI TCGA 2 cut(s) 81, 286
TasI AATT 1 cut(s) 224
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 60, 250, 255
XagI CCTNNNNNAGG 1 cut(s) 186
XhoI CTCGAG 1 cut(s) 285
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.