Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024480.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

122 .. 601

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024480.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgcattcccttctcgctgttctccttctccttcttctcttaacccctctttgtctctcctcagtgtctgagctccaggctctcatggccatgaaggcctctctggacccacaaaaccagttcttgacttcatggactcctcattctgatccatgtggtgatgattttgaaggtgtggcttgcaatgagcaaggccttgtgaccaatatatctttacaagggaagggtctctggggagagataccctcatctgtgggtgacctgaagagcctcacaggcctgtacctccacttcaatgccttgagtgggaaaatcccaaaggagattgctaatttggaccagcttagtgacttgtatctaaatgtgaataatctctctggagcaattcctaggcagattggtaacatgtctaatcttcaaggtgagtgtttgatttttgttcaaattttgcagtgttatgtttatgtcactttaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

159

Amino Acids

17.26

Weight (kDa)

4.6

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	170, 295, 419, 443
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	73, 343
AluI	AGCT	2 cut(s)	73, 343
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	59, 233
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	4 cut(s)	87, 96, 193, 277
ApoI	RAATTY	1 cut(s)	444
AspA2I	CCTAGG	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	106, 337
AsuHPI	GGTGA	3 cut(s)	170, 269, 434
AvaII	GGWCC	2 cut(s)	106, 337
AvrII	CCTAGG	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	75
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
Bbv12I	GWGCWC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	59, 233
BfaI	CTAG	1 cut(s)	390
BglI	GCCNNNNNGGC	2 cut(s)	95, 276
BlnI	CCTAGG	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	106, 337
BmgT120I	GGNCC	2 cut(s)	106, 337
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	2 cut(s)	59, 399
BpuEI	CTTGAG	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	60, 75
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	49, 129
BshFI	GGCC	4 cut(s)	89, 98, 195, 279
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	59, 233
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	4 cut(s)	89, 98, 195, 279
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	148
BspANI	GGCC	4 cut(s)	89, 98, 195, 279
BspCNI	CTCAG	2 cut(s)	61, 74
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	143
BspQI	GCTCTTC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	3 cut(s)	61, 69, 344
BstEII	GGTNACC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	2 cut(s)	59, 233
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 276
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	409
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	89, 98, 195, 279
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	69, 458
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	106, 337
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	5 cut(s)	85, 91, 132, 153, 406
CviJI	RGCY	9 cut(s)	73, 80, 89, 98, 179, 195, 270, 279, 343
CviKI_1	RGCY	9 cut(s)	73, 80, 89, 98, 179, 195, 270, 279, 343
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	61, 69, 344
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	389
Eco147I	AGGCCT	3 cut(s)	98, 195, 279
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	106, 337
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	389
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	5 cut(s)	88, 94, 135, 156, 409
FaiI	YATR	8 cut(s)	86, 92, 133, 154, 209, 407, 459, 465
FatI	CATG	5 cut(s)	84, 90, 131, 152, 405
FriOI	GRGCYC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	390
GsuI	CTGGAG	2 cut(s)	59, 399
HaeIII	GGCC	4 cut(s)	89, 98, 195, 279
Hin1II	CATG	5 cut(s)	88, 94, 135, 156, 409
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	3 cut(s)	170, 269, 434
Hpy188I	TCNGA	2 cut(s)	70, 148
Hpy188III	TCNNGA	3 cut(s)	104, 124, 378
HpyAV	CCTTC	6 cut(s)	20, 35, 41, 88, 164, 217
HpyCH4V	TGCA	3 cut(s)	4, 183, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 276
HpyF3I	CTNAG	3 cut(s)	61, 69, 344
Hsp92II	CATG	5 cut(s)	88, 94, 135, 156, 409
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	78, 380
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	5 cut(s)	199, 257, 347, 401, 466
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	3 cut(s)	26, 277, 407
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	4 cut(s)	331, 384, 444, 474
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	57, 70, 109, 150, 256, 281, 296
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	41, 473
MslI	CAYNNNNRTG	2 cut(s)	89, 294
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 276
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	88, 94, 135, 156, 409
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	4 cut(s)	199, 257, 347, 466
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	409
PceI	AGGCCT	3 cut(s)	98, 195, 279
PciI	ACATGT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	106, 337
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	89, 294
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	41, 473
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	106, 337
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	6 cut(s)	75, 175, 264, 288, 345, 424
SfiI	GGCCNNNNNGGCC	1 cut(s)	95
SinI	GGWCC	2 cut(s)	106, 337
SmiMI	CAYNNNNRTG	2 cut(s)	89, 294
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	4 cut(s)	331, 384, 444, 474
SseBI	AGGCCT	3 cut(s)	98, 195, 279
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	75
StuI	AGGCCT	3 cut(s)	98, 195, 279
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	389
TasI	AATT	4 cut(s)	331, 384, 444, 474
Tru1I	TTAA	2 cut(s)	41, 473
Tru9I	TTAA	2 cut(s)	41, 473
TscAI	CASTG	2 cut(s)	69, 458
TseFI	GTSAC	4 cut(s)	199, 257, 347, 466
Tsp45I	GTSAC	4 cut(s)	199, 257, 347, 466
TspDTI	ATGAA	2 cut(s)	107, 120
TspRI	CASTG	2 cut(s)	69, 458
VpaK11BI	GGWCC	2 cut(s)	106, 337
XapI	RAATTY	1 cut(s)	444
XceI	RCATGY	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.