Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024850.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 380

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024850.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

atggagtgccaagcaagaattcatctcgataccttatcagaagaagattcttggaacctttttgtgaagaaatcgggaaagtcttttcatacatctatccggctgtatggtccagcaaggatgttagctagagaatgtggtggtttcccacttgtactgataacagttgctcgggcacttggagataaacacatagacgactggaaagaagcagctcgacgagtacgcacatcccaactagccagtcctgaggatgggggagatccattcagatttataaagttgagctatgattacttgaggtctgatgatgccagatcattcttcttgcttagctgcctattcccagaagactatgacatcccaatcgaagacttgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

126

Amino Acids

14.46

Weight (kDa)

5.34

Isoelectric Point (pI)

68.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	2 cut(s)	156, 225
AfiI	CCNNNNNNNGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	4 cut(s)	128, 215, 288, 336
AluI	AGCT	4 cut(s)	128, 215, 288, 336
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	212, 336
ApoI	RAATTY	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	224, 323
BccI	CCATC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	129, 239
BisI	GCNGC	2 cut(s)	213, 337
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	214, 338
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	56
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	206, 243
Bse21I	CCTNAGG	1 cut(s)	249
BseGI	GGATG	4 cut(s)	126, 230, 259, 360
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	206, 243
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	224, 323
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	262, 317
Bsp1720I	GCTNAGC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	206, 243
BssMI	GATC	2 cut(s)	262, 317
Bst4CI	ACNGT	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	249, 332
BstF5I	GGATG	4 cut(s)	126, 230, 259, 360
BstKTI	GATC	2 cut(s)	265, 320
BstMBI	GATC	2 cut(s)	262, 317
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	224, 323
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	126, 230, 259, 360
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	155, 224
CviJI	RGCY	6 cut(s)	103, 128, 215, 242, 288, 336
CviKI_1	RGCY	6 cut(s)	103, 128, 215, 242, 288, 336
CviQI	GTAC	2 cut(s)	155, 224
DdeI	CTNAG	2 cut(s)	249, 332
DpnI	GATC	2 cut(s)	264, 319
DpnII	GATC	2 cut(s)	262, 317
Eco47I	GGWCC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	18
FaiI	YATR	6 cut(s)	90, 108, 194, 278, 291, 357
Fnu4HI	GCNGC	2 cut(s)	213, 337
FokI	GGATG	4 cut(s)	133, 217, 266, 347
Fsp4HI	GCNGC	2 cut(s)	213, 337
FspBI	CTAG	2 cut(s)	129, 239
GluI	GCNGC	2 cut(s)	213, 337
HapII	CCGG	1 cut(s)	100
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	40, 272, 307
Hpy188III	TCNNGA	3 cut(s)	26, 75, 248
Hpy99I	CGWCG	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	249, 332
Kzo9I	GATC	2 cut(s)	262, 317
LpnPI	CCDG	7 cut(s)	113, 126, 187, 256, 261, 328, 360
Lsp1109I	GCAGC	2 cut(s)	224, 323
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	129, 239
MalI	GATC	2 cut(s)	264, 319
MboI	GATC	2 cut(s)	262, 317
MboII	GAAGA	5 cut(s)	53, 56, 79, 316, 362
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	2 cut(s)	244, 294
MspI	CCGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	262, 317
NlaIV	GGNNCC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	214, 338
PsiI	TTATAA	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	156, 225
RsaNI	GTAC	2 cut(s)	155, 224
SatI	GCNGC	2 cut(s)	213, 337
Sau3AI	GATC	2 cut(s)	262, 317
Sau96I	GGNCC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	35, 60, 130, 217, 290, 305, 338
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	129, 239
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	27, 217, 369
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	212, 336
TspDTI	ATGAA	2 cut(s)	11, 77
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	2 cut(s)	129, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.