Rmu_sc0026574.1_g000001

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026574.1
N/A
Physical Location & Seq
Reverse (-)
658 .. 966
309 bp
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UTR
Exon/CDS
Intron
Rmu_sc0026574.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
atgaaagaagtttttcttcatattgcatgtttctttaaaggtcagaaacaaggctatgtgataaatgtcctacaatgctgtgacctcaatcctatgtatagtctcaaagtcctcgtagaaaaggccttaattaaaattgtgaaagacagtgacaatgacgataagatttggatgcatgatcttctagaagacatgggaaaagaaattgttcgacaagagtctcctgatgagaaaggacaacgcagtagactgtggctatatgaggatgttcgctacgtgcttgaggaaaacaccgtaagtgatatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

12.04

Weight (kDa)

4.97

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 107, 225
AoxI GGCC 1 cut(s) 123
Asp700I GAANNNNTTC 2 cut(s) 12, 207
BbsI GAAGAC 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 107, 225
BfaI CTAG 1 cut(s) 185
BmsI GCATC 1 cut(s) 162
BoxI GACNNNNGTC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 277
BseGI GGATG 2 cut(s) 177, 271
BshFI GGCC 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 107, 225
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 178
BspANI GGCC 1 cut(s) 125
BssMI GATC 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 149, 252, 295
BstBAI YACGTR 1 cut(s) 277
BstF5I GGATG 2 cut(s) 177, 271
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 107, 225
BstMBI GATC 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 30
BstPAI GACNNNNGTC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 177, 271
BtsIMutI CAGTG 1 cut(s) 154
CviAII CATG 3 cut(s) 27, 176, 193
CviJI RGCY 3 cut(s) 54, 125, 256
CviKI_1 RGCY 3 cut(s) 54, 125, 256
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DraI TTTAAA 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 177
FaeI CATG 3 cut(s) 30, 179, 196
FaiI YATR 9 cut(s) 21, 28, 57, 95, 99, 177, 194, 259, 261
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 3 cut(s) 26, 175, 192
FblI GTMKAC 1 cut(s) 247
FokI GGATG 2 cut(s) 184, 278
FspBI CTAG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 3 cut(s) 30, 179, 196
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 185, 224
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4III ACNGT 3 cut(s) 149, 252, 295
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 26, 175
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 30, 179, 196
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 1 cut(s) 237
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 80, 149
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 3 cut(s) 8, 173, 200
MluCI AATT 3 cut(s) 129, 135, 204
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 4 cut(s) 95, 122, 256, 277
Mph1103I ATGCAT 1 cut(s) 177
MroXI GAANNNNTTC 2 cut(s) 12, 207
MseI TTAA 4 cut(s) 36, 128, 132, 307
NdeII GATC 1 cut(s) 178
NlaIII CATG 3 cut(s) 30, 179, 196
NmuCI GTSAC 2 cut(s) 80, 149
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 1 cut(s) 30
PacI TTAATTAA 1 cut(s) 132
PceI AGGCCT 1 cut(s) 125
PdmI GAANNNNTTC 2 cut(s) 12, 207
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 217
SaqAI TTAA 4 cut(s) 36, 128, 132, 307
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 227
SetI ASST 3 cut(s) 43, 87, 279
SfaNI GCATC 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 129, 135, 204
SseBI AGGCCT 1 cut(s) 125
SspMI CTAG 1 cut(s) 185
StuI AGGCCT 1 cut(s) 125
TaaI ACNGT 3 cut(s) 149, 252, 295
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 211
TasI AATT 3 cut(s) 129, 135, 204
Tru1I TTAA 4 cut(s) 36, 128, 132, 307
Tru9I TTAA 4 cut(s) 36, 128, 132, 307
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 2 cut(s) 80, 149
Tsp45I GTSAC 2 cut(s) 80, 149
TspDTI ATGAA 2 cut(s) 8, 17
TspRI CASTG 1 cut(s) 154
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 2 cut(s) 12, 207
XspI CTAG 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.