Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027021.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 266 bp

atgaagtgcttctccttctatcttggagacaaaaaggatgaaccaaaaagcccaaatataacatttaccgatggtgaaatgaagagatctggatctgagttggattcccagaatatctctgacgccagttcagagtccttgaggaggaaccaatatcctagtttctctcagaggcccagcaacctcagaatattcacagtttctgagctgaaggcagccactaagaatttcggccgatctggcatggttggagagggtgggtttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

89

Amino Acids

9.85

Weight (kDa)

8.85

Isoelectric Point (pI)

76.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	144
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	173, 232
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	91
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	87, 182, 195, 199
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	157
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	175, 234
BsiEI	CGRYCG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	175, 234
Bsp143I	GATC	3 cut(s)	86, 92, 236
BspANI	GGCC	2 cut(s)	175, 234
BspCNI	CTCAG	4 cut(s)	88, 181, 196, 198
BspLI	GGNNCC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	3 cut(s)	86, 92, 236
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	5 cut(s)	96, 168, 185, 204, 222
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	89, 95, 239
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	3 cut(s)	86, 92, 236
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	2 cut(s)	86, 92
BstYI	RGATCY	2 cut(s)	86, 92
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	175, 234
BtsCI	GGATG	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	131
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	5 cut(s)	51, 175, 208, 218, 234
CviKI_1	RGCY	5 cut(s)	51, 175, 208, 218, 234
DdeI	CTNAG	5 cut(s)	96, 168, 185, 204, 222
DpnI	GATC	3 cut(s)	88, 94, 238
DpnII	GATC	3 cut(s)	86, 92, 236
EaeI	YGGCCR	1 cut(s)	232
EagI	CGGCCG	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EclXI	CGGCCG	1 cut(s)	232
Eco52I	CGGCCG	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	142
FaeI	CATG	1 cut(s)	247
FaiI	YATR	2 cut(s)	59, 245
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	175, 234
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	2 cut(s)	104, 134
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	6 cut(s)	97, 121, 133, 171, 188, 205
Hpy188III	TCNNGA	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	25, 205
HpyCH4III	ACNGT	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	5 cut(s)	96, 168, 185, 204, 222
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	86, 92, 236
LpnPI	CCDG	5 cut(s)	75, 122, 139, 190, 225
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	159
MalI	GATC	3 cut(s)	88, 94, 238
MboI	GATC	3 cut(s)	86, 92, 236
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	2 cut(s)	86, 92
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	81, 229
MnlI	CCTC	5 cut(s)	135, 138, 165, 194, 247
MroXI	GAANNNNTTC	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	3 cut(s)	86, 92, 236
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	86, 92
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	86, 92, 236
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	143
SetI	ASST	2 cut(s)	186, 210
SgeI	CNNG	9 cut(s)	35, 102, 121, 138, 151, 171, 189, 252, 256
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	1 cut(s)	226
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	17, 54, 95
XagI	CCTNNNNNAGG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.