Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028297.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 629

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028297.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ctgttaaggcaagctggagcaaaaacaaatgacctggccggagatggttccactacagctgtaattcttgctcatggtttgattactgaaggtgtgaaggttactgcagctggcatgaatcccattcaaattgctcgtgggatcgagaagactgcagtagccctagtttctgaactcaaattgatgtccagagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051082 GO:0061077

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

65

Amino Acids

6.67

Weight (kDa)

8.44

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	14, 59, 110
AluI	AGCT	3 cut(s)	14, 59, 110
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	3 cut(s)	54, 105, 153
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BsnI	GGCC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	2 cut(s)	109, 157
BspPI	GGATC	1 cut(s)	149
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	12, 112
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	3 cut(s)	54, 105, 153
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	12, 112
CviAII	CATG	2 cut(s)	74, 115
CviJI	RGCY	5 cut(s)	14, 38, 59, 110, 161
CviKI_1	RGCY	5 cut(s)	14, 38, 59, 110, 161
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	77, 118
FaiI	YATR	2 cut(s)	75, 116
FatI	CATG	2 cut(s)	73, 114
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	2 cut(s)	77, 118
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	145, 189
HpyAV	CCTTC	2 cut(s)	83, 91
HpyCH4V	TGCA	2 cut(s)	107, 155
Hsp92II	CATG	2 cut(s)	77, 118
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	4 cut(s)	20, 47, 52, 96
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	160
MluCI	AATT	3 cut(s)	63, 129, 179
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	59, 110
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	77, 118
NlaIV	GGNNCC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	2 cut(s)	109, 157
PvuII	CAGCTG	2 cut(s)	59, 110
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	6 cut(s)	16, 36, 61, 94, 102, 112
SfcI	CTRYAG	3 cut(s)	54, 105, 153
Sse9I	AATT	3 cut(s)	63, 129, 179
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	63, 129, 179
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	131
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.