Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030641.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 290

Gene Structure 290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 209 bp

gagctcttatttaccctctgaaattgatagccaagaatgctggtgtgaatggaagtgtggtcagcgagaaggtgctctctagcgacaactttaagtatggatataatgctgcaactggaaactatgaagatttaatggctgctggaatcattgatcctaccaaggtgagttgctgtattgagcttttctctgggaggtggggaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

68

Amino Acids

7.24

Weight (kDa)

6.32

Isoelectric Point (pI)

21.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	148
AluBI	AGCT	2 cut(s)	4, 183
AluI	AGCT	2 cut(s)	4, 183
Alw21I	GWGCWC	2 cut(s)	6, 77
AlwI	GGATC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	109, 139
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	6, 77
BbvI	GCAGC	2 cut(s)	96, 126
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	110, 140
BlsI	GCNGC	2 cut(s)	111, 141
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BsaJI	CCNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	96, 126
BsiHKAI	GWGCWC	2 cut(s)	6, 77
BsmI	GAATGC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	6, 77
Bsp143I	GATC	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	96, 126
Cfr13I	GGNCC	1 cut(s)	202
CviJI	RGCY	4 cut(s)	4, 31, 139, 183
CviKI_1	RGCY	4 cut(s)	4, 31, 139, 183
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	161
FaiI	YATR	4 cut(s)	98, 104, 125, 207
Fnu4HI	GCNGC	2 cut(s)	110, 140
FriOI	GRGCYC	1 cut(s)	6
Fsp4HI	GCNGC	2 cut(s)	110, 140
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	110, 140
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	26, 101, 128, 176
Lsp1109I	GCAGC	2 cut(s)	96, 126
MaeI	CTAG	1 cut(s)	80
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	6, 77
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	2 cut(s)	26, 188
MseI	TTAA	2 cut(s)	92, 133
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	111, 141
Psp124BI	GAGCTC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	92, 133
SatI	GCNGC	2 cut(s)	110, 140
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	6, 77
SetI	ASST	5 cut(s)	6, 74, 167, 185, 199
SgeI	CNNG	8 cut(s)	45, 53, 78, 92, 128, 155, 174, 203
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	161
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	92, 133
Tru9I	TTAA	2 cut(s)	92, 133
TseI	GCWGC	2 cut(s)	109, 139
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	202
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.