Rmu_sc0031285.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031285.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 784
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031285.1_g000001.1.cds

Sequence Viewer

Length: 428 bp
atgatttggatctgccttatattgctgcagcttatattccgcgattttaaaccgtcaaatgttctgctagatgaggactacaatgcaaagctttcagactttggactcgccaggcaaggacctctccagggaatgactcatgtatcaaccgcagttgttgggacggtagggtatgcagctccagaatatgtacagacagggaaacttaccgctaaaagtgatgtctggagctttggagtggttctctacgagctcatcacaggaaggagggcgatggagagaaatctgccccggagtgagcaaaaacttttggaatgggtcagaccttatgcttcagacgcgaagaaattccaccttattgtagacccacgacttgaaggacagtattgcatcaaatcggctcagaagctggcatcgttagctaacag

Protein Analysis

142

Amino Acids

16.0

Weight (kDa)

8.91

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 42, 341
AciI CCGC 3 cut(s) 40, 150, 210
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 2 cut(s) 110, 126
AluBI AGCT 7 cut(s) 31, 91, 179, 231, 253, 409, 422
AluI AGCT 7 cut(s) 31, 91, 179, 231, 253, 409, 422
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 409
ApeKI GCWGC 3 cut(s) 25, 28, 176
ApoI RAATTY 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 292
AvaII GGWCC 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 12, 40, 188
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 2 cut(s) 112, 128
BcnI CCSGG 1 cut(s) 292
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 3 cut(s) 26, 29, 177
BlsI GCNGC 3 cut(s) 27, 30, 178
Bme1390I CCNGG 3 cut(s) 112, 128, 292
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 3 cut(s) 112, 128, 292
BmsI GCATC 2 cut(s) 399, 422
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 3 cut(s) 110, 165, 247
BpuMI CCSGG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 127, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 112, 128
BseDI CCNNGG 2 cut(s) 127, 290
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 12, 40, 188
Bsh1236I CGCG 2 cut(s) 42, 341
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 3 cut(s) 40, 150, 210
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 2 cut(s) 42, 341
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 17
BsrGI TGTACA 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 127, 290
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 112, 128
Bst4CI ACNGT 3 cut(s) 54, 166, 384
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 402
BstFNI CGCG 2 cut(s) 42, 341
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 338, 419
BstNI CCWGG 2 cut(s) 112, 128
BstSCI CCNGG 3 cut(s) 110, 126, 290
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 2 cut(s) 42, 341
BstV1I GCAGC 3 cut(s) 12, 40, 188
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 411
CaiI CAGNNNCTG 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 119
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 140
CviJI RGCY 8 cut(s) 31, 91, 179, 231, 253, 401, 409, 422
CviKI_1 RGCY 8 cut(s) 31, 91, 179, 231, 253, 401, 409, 422
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 402
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DraI TTTAAA 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 110, 126
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 1 cut(s) 143
FaiI YATR 6 cut(s) 20, 35, 141, 174, 189, 330
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 26, 29, 177
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 26, 29, 177
FspBI CTAG 1 cut(s) 68
GluI GCNGC 3 cut(s) 26, 29, 177
GsuI CTGGAG 3 cut(s) 110, 165, 247
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 347
Hin1II CATG 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 2 cut(s) 105, 136
HpaII CCGG 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 97, 323, 337, 405
Hpy188III TCNNGA 2 cut(s) 182, 226
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 258, 371
HpyCH4III ACNGT 3 cut(s) 54, 166, 384
HpyCH4V TGCA 4 cut(s) 28, 86, 176, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 419
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 184, 228
Lsp1109I GCAGC 3 cut(s) 12, 40, 188
LweI GCATC 2 cut(s) 399, 422
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 355
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 1 cut(s) 347
MlyI GAGTC 2 cut(s) 99, 130
MnlI CCTC 3 cut(s) 67, 132, 261
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 1 cut(s) 48
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 3 cut(s) 112, 128, 292
MvaI CCWGG 2 cut(s) 112, 128
MvnI CGCG 2 cut(s) 42, 341
MwoI GCNNNNNNNGC 2 cut(s) 338, 419
NciI CCSGG 1 cut(s) 292
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 347
PkrI GCNGC 3 cut(s) 27, 30, 178
PleI GAGTC 2 cut(s) 99, 130
PpsI GAGTC 2 cut(s) 99, 130
PpuMI RGGWCCY 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 110, 126
PspGI CCWGG 2 cut(s) 110, 126
PspPI GGNCC 1 cut(s) 119
PspPPI RGGWCCY 1 cut(s) 119
PstI CTGCAG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 26, 29, 177
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 2 cut(s) 99, 130
ScrFI CCNGG 3 cut(s) 112, 128, 292
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 2 cut(s) 399, 422
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 1 cut(s) 119
Sse9I AATT 1 cut(s) 347
SsiI CCGC 3 cut(s) 40, 150, 210
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 110, 126, 290
TaaI ACNGT 3 cut(s) 54, 166, 384
TasI AATT 1 cut(s) 347
TatI WGTACW 1 cut(s) 190
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 3 cut(s) 25, 28, 176
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.