Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032330.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 339

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032330.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 338 bp

atgggtttccggggttgtgttattctccgtttcctgttcctgttcctctcactgtgtgcgcctgttcagtcacagagcgaggaccagccagccatggaagacatcctgaaaagcttgacgtccaaactgccggccaagtggaaggccggcaccgattgctgcacctgggccggagtctcgtgcgacaatagcaagaaggtaaccggcctcgtaatcaaggagttaaatctgacgggtaagctcagtccggcggttcggaacctcacgtcgttgcagagtctgcaacttatgcggaacagcctcaccggagacttcccgagtctcaaaggcctcggttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.22

Weight (kDa)

9.14

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	2 cut(s)	251, 292
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	114, 241
AluI	AGCT	2 cut(s)	114, 241
Alw26I	GTCTC	3 cut(s)	181, 303, 326
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	5 cut(s)	132, 144, 168, 205, 328
ApeKI	GCWGC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	82, 168
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	3 cut(s)	181, 303, 326
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	11, 166
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	316
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	82, 168
BmiI	GGNNCC	2 cut(s)	151, 260
BmrFI	CCNGG	2 cut(s)	11, 166
BpiI	GAAGAC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	10, 93, 165, 331
BsaWI	WCCGGW	1 cut(s)	305
Bse118I	RCCGGY	3 cut(s)	130, 146, 203
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	4 cut(s)	10, 93, 165, 331
BseGI	GGATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	5 cut(s)	134, 146, 170, 207, 330
BshNI	GGYRCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	7 cut(s)	10, 131, 147, 171, 204, 248, 306
BsmAI	GTCTC	3 cut(s)	181, 303, 326
BsnI	GGCC	5 cut(s)	134, 146, 170, 207, 330
BsoBI	CYCGRG	1 cut(s)	316
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	2 cut(s)	251, 292
BspANI	GGCC	5 cut(s)	134, 146, 170, 207, 330
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	151, 260
BspT107I	GGYRCC	1 cut(s)	149
BsrFI	RCCGGY	3 cut(s)	130, 146, 203
BssAI	RCCGGY	3 cut(s)	130, 146, 203
BssECI	CCNNGG	4 cut(s)	10, 93, 165, 331
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	119
BstAPI	GCANNNNNTGC	3 cut(s)	156, 280, 289
BstC8I	GCNNGC	3 cut(s)	90, 132, 148
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	61
BstMAI	GTCTC	3 cut(s)	181, 303, 326
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 189, 280, 289
BstNI	CCWGG	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	9, 164
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	5 cut(s)	134, 146, 170, 207, 330
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	90, 132, 148
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	3 cut(s)	130, 146, 203
Cfr13I	GGNCC	2 cut(s)	82, 168
CviAII	CATG	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	242
DraIII	CACNNNGTG	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	316
Eco91I	GGTNACC	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	97
FaiI	YATR	2 cut(s)	95, 290
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	160
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	160
HaeIII	GGCC	5 cut(s)	134, 146, 170, 207, 330
HapII	CCGG	7 cut(s)	10, 131, 147, 171, 204, 248, 306
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	174, 277, 319
HpaII	CCGG	7 cut(s)	10, 131, 147, 171, 204, 248, 306
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	231, 258
Hpy188III	TCNNGA	2 cut(s)	106, 316
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	136, 190
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	2 cut(s)	119, 266
HpyCH4V	TGCA	3 cut(s)	162, 274, 283
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 189, 280, 289
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	2 cut(s)	119, 266
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	59
KroI	GCCGGC	2 cut(s)	130, 146
KroNI	GCCGGC	2 cut(s)	132, 148
Lsp1109I	GCAGC	1 cut(s)	146
MaeII	ACGT	2 cut(s)	119, 266
MaeIII	GTNAC	2 cut(s)	69, 199
MboII	GAAGA	1 cut(s)	110
MlyI	GAGTC	3 cut(s)	183, 286, 328
MnlI	CCTC	5 cut(s)	56, 73, 218, 272, 311
MroNI	GCCGGC	2 cut(s)	130, 146
MseI	TTAA	1 cut(s)	224
MspI	CCGG	7 cut(s)	10, 131, 147, 171, 204, 248, 306
MspR9I	CCNGG	2 cut(s)	11, 166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	156, 189, 280, 289
NaeI	GCCGGC	2 cut(s)	132, 148
NciI	CCSGG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	93
NgoMIV	GCCGGC	2 cut(s)	130, 146
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	151, 260
NmuCI	GTSAC	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	330
PdiI	GCCGGC	2 cut(s)	132, 148
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	3 cut(s)	182, 285, 327
PpsI	GAGTC	3 cut(s)	182, 285, 327
Psp6I	CCWGG	1 cut(s)	164
PspEI	GGTNACC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	151, 260
PspPI	GGNCC	2 cut(s)	82, 168
PstNI	CAGNNNCTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	82, 168
SchI	GAGTC	3 cut(s)	183, 286, 328
ScrFI	CCNGG	2 cut(s)	11, 166
SetI	ASST	7 cut(s)	116, 122, 167, 201, 243, 264, 269
SinI	GGWCC	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	251, 292
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	9, 164
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	2 cut(s)	122, 269
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	82
ZraI	GACGTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.