Rmu_sc0032463.1_g000001
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032463.1
N/A
Physical Location & Seq
Forward (+)
1 .. 874
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032463.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
attgaaaacaagggtgtcactgggccccacttgatagtggctccaaaggctgtattaccaaattgggttactgaatttgcaacatgggctcctagtattaaggccattctttatgacgggcgccaagaggaaagaaaggcaatgaaggaagaattatcaggggaaggaaaatttaatgtattgatcacacattatgaccttatcatgagggataaacaatttttgaagaagattagctgggcatacctgatcgttgacgaagggcatcggttgaagaattctgagtgtgctctcgctatcacacttgcaggctatgacatgcgacgtagacttctgttgactggcacgccaatacagaatagcttgcaggagttgtggtccctactcaattttcttctcccacacattttcaattca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

139

Amino Acids

15.92

Weight (kDa)

8.73

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 328
AcsI RAATTY 3 cut(s) 74, 170, 277
AcyI GRCGYC 1 cut(s) 121
AgsI TTSAA 4 cut(s) 5, 226, 274, 412
AluBI AGCT 2 cut(s) 237, 363
AluI AGCT 2 cut(s) 237, 363
Alw21I GWGCWC 1 cut(s) 292
AoxI GGCC 2 cut(s) 23, 102
ApaI GGGCCC 1 cut(s) 27
ApoI RAATTY 3 cut(s) 74, 170, 277
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 3 cut(s) 23, 24, 378
AvaII GGWCC 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 120
BanII GRGCYC 2 cut(s) 27, 91
Bbv12I GWGCWC 1 cut(s) 292
BclI TGATCA 1 cut(s) 183
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 3 cut(s) 23, 24, 378
BmiI GGNNCC 6 cut(s) 25, 26, 42, 90, 122, 380
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 362, 392
Bse1I ACTGG 2 cut(s) 25, 346
Bse3DI GCAATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 25, 346
BseSI GKGCMC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 237
BshFI GGCC 2 cut(s) 25, 104
BshNI GGYRCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 292
BslFI GGGAC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 25, 104
Bsp120I GGGCCC 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 27, 91, 292
Bsp143I GATC 2 cut(s) 183, 249
BspANI GGCC 2 cut(s) 25, 104
BspCNI CTCAG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 6 cut(s) 25, 26, 42, 90, 122, 380
BspT107I GGYRCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 2 cut(s) 25, 346
BssMI GATC 2 cut(s) 183, 249
BssNI GRCGYC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 310, 347, 365
BstDEI CTNAG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 2 cut(s) 186, 252
BstMBI GATC 2 cut(s) 183, 249
BstMWI GCNNNNNNNGC 2 cut(s) 47, 86
BstNSI RCATGY 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 25, 104
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 310, 347, 365
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 3 cut(s) 23, 24, 378
CviAII CATG 3 cut(s) 84, 205, 319
CviJI RGCY 8 cut(s) 25, 41, 50, 89, 104, 237, 312, 363
CviKI_1 RGCY 8 cut(s) 25, 41, 50, 89, 104, 237, 312, 363
DdeI CTNAG 1 cut(s) 282
DinI GGCGCC 1 cut(s) 122
DpnI GATC 2 cut(s) 185, 251
DpnII GATC 2 cut(s) 183, 249
Eco24I GRGCYC 2 cut(s) 27, 91
Eco47I GGWCC 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 277
EcoT38I GRGCYC 2 cut(s) 27, 91
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
FaeI CATG 3 cut(s) 87, 208, 322
FaiI YATR 7 cut(s) 85, 114, 195, 206, 244, 315, 320
FaqI GGGAC 1 cut(s) 364
FatI CATG 3 cut(s) 83, 204, 318
FbaI TGATCA 1 cut(s) 183
FblI GTMKAC 1 cut(s) 328
FriOI GRGCYC 2 cut(s) 27, 91
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 2 cut(s) 25, 104
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 3 cut(s) 87, 208, 322
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 2 cut(s) 256, 339
HindII GTYRAC 2 cut(s) 256, 339
Hpy166II GTNNAC 3 cut(s) 256, 329, 339
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 3 cut(s) 256, 329, 339
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 3 cut(s) 139, 158, 254
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 80, 308, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 86
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 325
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 3 cut(s) 87, 208, 322
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 183, 249
LmnI GCTCC 2 cut(s) 46, 94
LpnPI CCDG 7 cut(s) 6, 144, 223, 260, 294, 327, 353
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 16, 67
MalI GATC 2 cut(s) 185, 251
MboI GATC 2 cut(s) 183, 249
MboII GAAGA 5 cut(s) 161, 238, 241, 286, 386
MhlI GDGCHC 3 cut(s) 27, 91, 292
MluCI AATT 8 cut(s) 61, 74, 152, 170, 218, 277, 388, 412
Mly113I GGCGCC 1 cut(s) 121
MnlI CCTC 2 cut(s) 121, 201
MseI TTAA 2 cut(s) 99, 174
MwoI GCNNNNNNNGC 2 cut(s) 47, 86
NarI GGCGCC 1 cut(s) 121
NdeII GATC 2 cut(s) 183, 249
NlaIII CATG 3 cut(s) 87, 208, 322
NlaIV GGNNCC 6 cut(s) 25, 26, 42, 90, 122, 380
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 322
PagI TCATGA 1 cut(s) 204
PluTI GGCGCC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 6 cut(s) 25, 26, 42, 90, 122, 380
PspOMI GGGCCC 1 cut(s) 23
PspPI GGNCC 3 cut(s) 23, 24, 378
SaqAI TTAA 2 cut(s) 99, 174
Sau3AI GATC 2 cut(s) 183, 249
Sau96I GGNCC 3 cut(s) 23, 24, 378
SduI GDGCHC 3 cut(s) 27, 91, 292
SetI ASST 5 cut(s) 201, 239, 249, 328, 365
SfaNI GCATC 1 cut(s) 274
SfoI GGCGCC 1 cut(s) 122
SinI GGWCC 1 cut(s) 378
Sse9I AATT 8 cut(s) 61, 74, 152, 170, 218, 277, 388, 412
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 1 cut(s) 93
TaiI ACGT 1 cut(s) 328
TasI AATT 8 cut(s) 61, 74, 152, 170, 218, 277, 388, 412
Tru1I TTAA 2 cut(s) 99, 174
Tru9I TTAA 2 cut(s) 99, 174
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 3 cut(s) 74, 170, 277
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 328
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.