Rmu_sc0032540.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032540.1
N/A
Physical Location & Seq
Forward (+)
61 .. 543
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032540.1_g000001.1.cds

Sequence Viewer

Length: 483 bp
atgcacaatgctgaattgaacatcccgaacgaggaaatagaatcctgtaagaagcagatggaggagggtgttgagctcgttcgaaagctatccaaagtttccaagtggaactacaggaagcctcgttacactgatcaacttgttcagttggatggatcccttaagagaatgttggatataatgaaggtgcaggaagcaagggatgtgaaggaaaccttggttttggtgcggagtatagatactgtggtcaagcgacttgaagggaatggtttggtacagagtcaatttgaggtcaacggttgttgtgcagtgcctgatgaacaacctcctccaacgattacagttggattggatgctccattggaggaactaaagaagaattttctcaaggatggggtgtcgatgcttgtactggctggtcctggaggatgtgggaaaaccacattggcaaaagccttctgtcaagatcaggaagtcaaaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

161

Amino Acids

17.91

Weight (kDa)

5.95

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 150, 163
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 2 cut(s) 276, 411
AfiI CCNNNNNNNGG 1 cut(s) 31
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 19, 260
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 4 cut(s) 200, 232, 428, 460
AluBI AGCT 2 cut(s) 76, 88
AluI AGCT 2 cut(s) 76, 88
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 2 cut(s) 150, 163
AlwNI CAGNNNCTG 1 cut(s) 314
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 419
AsuII TTCGAA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 419
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BamHI GGATCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 78
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 3 cut(s) 52, 146, 386
BciT130I CCWGG 1 cut(s) 423
BclI TGATCA 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 112
BfrI CTTAAG 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 343, 393
BpmI CTGGAG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 6 cut(s) 21, 157, 208, 358, 397, 434
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 417
BseRI GAGGAG 2 cut(s) 77, 318
BsgI GTGCAG 2 cut(s) 209, 327
BsiHKAI GWGCWC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 31
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 133, 155, 466
BspACI CCGC 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 150, 163
BspT104I TTCGAA 1 cut(s) 82
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 3 cut(s) 133, 155, 466
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 244, 299, 343
BstAFI CTTAAG 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 82
BstF5I GGATG 6 cut(s) 21, 157, 208, 358, 397, 434
BstKTI GATC 3 cut(s) 136, 158, 469
BstMBI GATC 3 cut(s) 133, 155, 466
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsCI GGATG 6 cut(s) 21, 157, 208, 358, 397, 434
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 129, 315
CaiI CAGNNNCTG 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 275, 410
CviJI RGCY 5 cut(s) 76, 88, 121, 416, 455
CviKI_1 RGCY 5 cut(s) 76, 88, 121, 416, 455
CviQI GTAC 2 cut(s) 275, 410
DpnI GATC 3 cut(s) 135, 157, 468
DpnII GATC 3 cut(s) 133, 155, 466
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 419
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 216
FaiI YATR 2 cut(s) 179, 236
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FbaI TGATCA 1 cut(s) 133
FokI GGATG 6 cut(s) 8, 164, 215, 365, 404, 441
FriOI GRGCYC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 444
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 41, 280
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 25, 464, 470
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 4 cut(s) 178, 202, 254, 466
HpyCH4III ACNGT 3 cut(s) 244, 299, 343
HpyCH4V TGCA 3 cut(s) 4, 190, 308
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 155, 466
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 9 cut(s) 58, 100, 176, 327, 398, 402, 408, 435, 455
LweI GCATC 2 cut(s) 343, 393
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 135, 157, 468
MboI GATC 3 cut(s) 133, 155, 466
MboII GAAGA 1 cut(s) 388
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 3 cut(s) 14, 284, 379
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 4 cut(s) 129, 153, 325, 356
MnlI CCTC 9 cut(s) 25, 55, 58, 132, 283, 336, 339, 358, 419
MseI TTAA 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
NdeII GATC 3 cut(s) 133, 155, 466
NlaIV GGNNCC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 82
PfeI GAWTC 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 421
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 2 cut(s) 276, 411
RsaNI GTAC 2 cut(s) 275, 410
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 3 cut(s) 133, 155, 466
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 78, 90, 189, 218, 294, 328
SfaNI GCATC 2 cut(s) 343, 393
SfcI CTRYAG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 161, 386
SmoI CTYRAG 2 cut(s) 161, 386
Sse9I AATT 3 cut(s) 14, 284, 379
SsiI CCGC 1 cut(s) 229
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 244, 299, 343
TaqI TCGA 2 cut(s) 82, 401
TasI AATT 3 cut(s) 14, 284, 379
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 136, 315
TspDTI ATGAA 2 cut(s) 197, 333
TspRI CASTG 2 cut(s) 136, 315
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.