Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033863.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 633

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 616 bp

atgacgaaacaacccttctccgttctcattaccatcctcaccttcatcttgaccattttgttcaccctcccattttcccatgcactcggctccggcgccactctcgccgtcagctacgccagtggcgccgtctgcggcttggtctccggccaacccacgcagagcatagtctgctaccggcgaggccaaaccatctccgtcgagcccaacgtctccttctcgtcaatctccggcggccggacctccctctgcggcctccggtcgggcggctacgccctgctctgttacgacaatctactctcccaagactccgtctttgattcgaaaagagtctactttaacgaaagtggtgaattggaaaacatagccgtcggagaaaaccatatttgcgccaccgtggtgggttccggcgccgtgaaatgttggcgagaagacgacggaacgtttcaactgccatctgggtcggaccaattcgggtccgtctcatctgggtcgggcttctcctgtggaatttcgaagaacgactcaagggtccggtgttgggggactagtacttccatggcggccgagattgaaaatgggtttggagaaacggccatggcgagtattgaagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

205

Amino Acids

21.49

Weight (kDa)

4.96

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	530
AccB1I	GGYRCC	3 cut(s)	95, 125, 410
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	5 cut(s)	135, 234, 252, 267, 563
AclI	AACGTT	1 cut(s)	443
AcoI	YGGCCR	4 cut(s)	148, 235, 564, 594
AcsI	RAATTY	1 cut(s)	510
AcyI	GRCGYC	3 cut(s)	96, 126, 411
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	237, 262, 541
AgsI	TTSAA	3 cut(s)	449, 575, 611
AhlI	ACTAGT	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 567, 599
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw26I	GTCTC	3 cut(s)	148, 217, 487
AoxI	GGCC	6 cut(s)	148, 184, 235, 253, 564, 594
ApoI	RAATTY	1 cut(s)	510
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	4 cut(s)	98, 128, 392, 413
AspS9I	GGNCC	4 cut(s)	240, 466, 477, 532
AsuHPI	GGTGA	3 cut(s)	31, 55, 362
AsuII	TTCGAA	2 cut(s)	323, 515
AvaII	GGWCC	4 cut(s)	240, 466, 477, 532
BanI	GGYRCC	3 cut(s)	95, 125, 410
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	438
BccI	CCATC	3 cut(s)	41, 200, 463
BceAI	ACGGC	5 cut(s)	92, 113, 353, 398, 609
BcoDI	GTCTC	3 cut(s)	148, 217, 487
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	1 cut(s)	549
BfoI	RGCGCY	3 cut(s)	99, 129, 414
BisI	GCNGC	5 cut(s)	136, 235, 253, 268, 564
BlsI	GCNGC	5 cut(s)	137, 236, 254, 269, 565
BmcAI	AGTACT	1 cut(s)	553
Bme18I	GGWCC	4 cut(s)	240, 466, 477, 532
BmgT120I	GGNCC	4 cut(s)	240, 466, 477, 532
BmiI	GGNNCC	7 cut(s)	91, 97, 127, 406, 412, 478, 533
BpiI	GAAGAC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	323, 515
BpuEI	CTTGAG	1 cut(s)	511
BsaHI	GRCGYC	3 cut(s)	96, 126, 411
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	3 cut(s)	396, 558, 597
BsaWI	WCCGGW	2 cut(s)	258, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 262, 541
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	396, 558, 597
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	237, 262, 541
BseNI	ACTGG	1 cut(s)	120
BseX3I	CGGCCG	2 cut(s)	235, 564
Bsh1285I	CGRYCG	3 cut(s)	238, 263, 567
BshFI	GGCC	6 cut(s)	150, 186, 237, 255, 566, 596
BshNI	GGYRCC	3 cut(s)	95, 125, 410
BsiEI	CGRYCG	3 cut(s)	238, 263, 567
BsiSI	CCGG	8 cut(s)	93, 147, 178, 231, 238, 259, 408, 535
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	237, 262, 541
BsmAI	GTCTC	3 cut(s)	148, 217, 487
BsmBI	CGTCTC	2 cut(s)	217, 487
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	6 cut(s)	150, 186, 237, 255, 566, 596
Bso31I	GGTCTC	1 cut(s)	148
Bsp119I	TTCGAA	2 cut(s)	323, 515
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp19I	CCATGG	2 cut(s)	558, 597
BspACI	CCGC	5 cut(s)	135, 234, 252, 267, 563
BspANI	GGCC	6 cut(s)	150, 186, 237, 255, 566, 596
BspLI	GGNNCC	7 cut(s)	91, 97, 127, 406, 412, 478, 533
BspT104I	TTCGAA	2 cut(s)	323, 515
BspT107I	GGYRCC	3 cut(s)	95, 125, 410
BspTNI	GGTCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	396, 558, 597
BssNI	GRCGYC	3 cut(s)	96, 126, 411
BssT1I	CCWWGG	2 cut(s)	558, 597
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	3 cut(s)	96, 126, 411
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstBI	TTCGAA	2 cut(s)	323, 515
BstDSI	CCRYGG	3 cut(s)	396, 558, 597
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	3 cut(s)	99, 129, 414
BstHHI	GCGC	4 cut(s)	98, 128, 392, 413
BstMAI	GTCTC	3 cut(s)	148, 217, 487
BstMCI	CGRYCG	3 cut(s)	238, 263, 567
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 125, 132, 171
BstV2I	GAAGAC	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstZI	CGGCCG	2 cut(s)	235, 564
BsuRI	GGCC	6 cut(s)	150, 186, 237, 255, 566, 596
BtgI	CCRYGG	3 cut(s)	396, 558, 597
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	127
CfoI	GCGC	4 cut(s)	98, 128, 392, 413
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	4 cut(s)	240, 466, 477, 532
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	3 cut(s)	80, 559, 598
CviQI	GTAC	1 cut(s)	552
DinI	GGCGCC	3 cut(s)	97, 127, 412
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	4 cut(s)	148, 235, 564, 594
EagI	CGGCCG	2 cut(s)	235, 564
EclXI	CGGCCG	2 cut(s)	235, 564
Eco130I	CCWWGG	2 cut(s)	558, 597
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	4 cut(s)	240, 466, 477, 532
Eco52I	CGGCCG	2 cut(s)	235, 564
EcoT14I	CCWWGG	2 cut(s)	558, 597
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	3 cut(s)	97, 127, 412
EheI	GGCGCC	3 cut(s)	97, 127, 412
ErhI	CCWWGG	2 cut(s)	558, 597
Esp3I	CGTCTC	2 cut(s)	217, 487
FaeI	CATG	3 cut(s)	83, 562, 601
FaiI	YATR	6 cut(s)	81, 167, 365, 384, 560, 599
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	3 cut(s)	79, 558, 597
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	5 cut(s)	136, 235, 253, 268, 564
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	5 cut(s)	136, 235, 253, 268, 564
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	4 cut(s)	97, 127, 391, 412
GluI	GCNGC	5 cut(s)	136, 235, 253, 268, 564
HaeII	RGCGCY	3 cut(s)	99, 129, 414
HaeIII	GGCC	6 cut(s)	150, 186, 237, 255, 566, 596
HapII	CCGG	8 cut(s)	93, 147, 178, 231, 238, 259, 408, 535
HhaI	GCGC	4 cut(s)	98, 128, 392, 413
Hin1I	GRCGYC	3 cut(s)	96, 126, 411
Hin1II	CATG	3 cut(s)	83, 562, 601
Hin6I	GCGC	4 cut(s)	96, 126, 390, 411
HinP1I	GCGC	4 cut(s)	96, 126, 390, 411
HinfI	GANTC	4 cut(s)	308, 320, 330, 524
HpaII	CCGG	8 cut(s)	93, 147, 178, 231, 238, 259, 408, 535
HphI	GGTGA	3 cut(s)	31, 55, 362
Hpy166II	GTNNAC	2 cut(s)	63, 334
Hpy188I	TCNGA	2 cut(s)	374, 466
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	63, 334
Hpy99I	CGWCG	3 cut(s)	203, 374, 440
HpyAV	CCTTC	3 cut(s)	25, 52, 226
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	210, 443
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 125, 132, 171
HpySE526I	ACGT	2 cut(s)	210, 443
Hsp92I	GRCGYC	3 cut(s)	96, 126, 411
Hsp92II	CATG	3 cut(s)	83, 562, 601
HspAI	GCGC	4 cut(s)	96, 126, 390, 411
KasI	GGCGCC	3 cut(s)	95, 125, 410
LmnI	GCTCC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	2 cut(s)	210, 443
MaeIII	GTNAC	1 cut(s)	284
MboII	GAAGA	2 cut(s)	443, 529
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	3 cut(s)	353, 470, 510
Mly113I	GGCGCC	3 cut(s)	96, 126, 411
MlyI	GAGTC	3 cut(s)	302, 339, 518
MmeI	TCCRAC	2 cut(s)	352, 444
MnlI	CCTC	6 cut(s)	47, 77, 176, 253, 257, 266
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	8 cut(s)	93, 147, 178, 231, 238, 259, 408, 535
MwoI	GCNNNNNNNGC	4 cut(s)	104, 125, 132, 171
NarI	GGCGCC	3 cut(s)	96, 126, 411
NcoI	CCATGG	2 cut(s)	558, 597
NlaIII	CATG	3 cut(s)	83, 562, 601
NlaIV	GGNNCC	7 cut(s)	91, 97, 127, 406, 412, 478, 533
NmeAIII	GCCGAG	2 cut(s)	66, 592
NspV	TTCGAA	2 cut(s)	323, 515
OliI	CACNNNNGTG	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 599
PfeI	GAWTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	5 cut(s)	137, 236, 254, 269, 565
PleI	GAGTC	3 cut(s)	302, 338, 518
PluTI	GGCGCC	3 cut(s)	99, 129, 414
PpsI	GAGTC	3 cut(s)	302, 338, 518
Psp1406I	AACGTT	1 cut(s)	443
PspN4I	GGNNCC	7 cut(s)	91, 97, 127, 406, 412, 478, 533
PspPI	GGNCC	4 cut(s)	240, 466, 477, 532
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	136, 235, 253, 268, 564
Sau96I	GGNCC	4 cut(s)	240, 466, 477, 532
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	3 cut(s)	302, 339, 518
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	5 cut(s)	44, 116, 213, 245, 446
SfoI	GGCGCC	3 cut(s)	97, 127, 412
SfuI	TTCGAA	2 cut(s)	323, 515
SinI	GGWCC	4 cut(s)	240, 466, 477, 532
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	3 cut(s)	353, 470, 510
SsiI	CCGC	5 cut(s)	135, 234, 252, 267, 563
SspDI	GGCGCC	3 cut(s)	95, 125, 410
SspMI	CTAG	1 cut(s)	549
StyI	CCWWGG	2 cut(s)	558, 597
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	213, 446
TaqI	TCGA	3 cut(s)	201, 323, 515
TasI	AATT	3 cut(s)	353, 470, 510
TatI	WGTACW	1 cut(s)	551
TauI	GCSGC	5 cut(s)	138, 237, 255, 270, 566
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	5 cut(s)	10, 187, 301, 453, 469
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	4 cut(s)	240, 466, 477, 532
XapI	RAATTY	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	549
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.