Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040309.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1940

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 260 bp

atgtgctctcttactcatgctgtctatgatctgacacggtgtagagctcttcataacaacaacttctatggaactattccttcagacctggggaattgtacacagctgcagcgaatatacttgcagggtaattacttgagcggatttatccccagtgatttgggaaagctttctgacctccaatacttagatatttcaagtaactctctgagtggaagtatccctccgtcactgggaaagttggataatattgttacttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044237 GO:0044249 GO:0044464 GO:0045229 GO:0048316 GO:0048354 GO:0048359 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

86

Amino Acids

9.42

Weight (kDa)

5.97

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	47, 106, 169
AluI	AGCT	3 cut(s)	47, 106, 169
Alw21I	GWGCWC	2 cut(s)	8, 49
ApeKI	GCWGC	2 cut(s)	106, 109
Asp700I	GAANNNNTTC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	8, 49
BbvI	GCAGC	2 cut(s)	93, 121
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	107, 110
BlsI	GCNGC	2 cut(s)	108, 111
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmrI	ACTGGG	2 cut(s)	147, 242
BmuI	ACTGGG	2 cut(s)	147, 242
BpuEI	CTTGAG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	153, 237
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	153, 237
BseXI	GCAGC	2 cut(s)	93, 121
BsiHKAI	GWGCWC	2 cut(s)	8, 49
BslI	CCNNNNNNNGG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	8, 49
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	54
BsrBI	CCGCTC	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	153, 237
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	187, 209
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	93, 121
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	160, 230
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	3 cut(s)	47, 106, 169
CviKI_1	RGCY	3 cut(s)	47, 106, 169
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	187, 209
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	1 cut(s)	20
FaiI	YATR	5 cut(s)	18, 27, 54, 69, 118
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	107, 110
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	107, 110
GluI	GCNGC	2 cut(s)	107, 110
Hin1II	CATG	1 cut(s)	20
HindIII	AAGCTT	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	33, 85, 175, 210
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	109, 124
HpyF3I	CTNAG	2 cut(s)	187, 209
Hsp92II	CATG	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	74, 101, 110, 166, 218
Lsp1109I	GCAGC	2 cut(s)	93, 121
MaeIII	GTNAC	3 cut(s)	200, 228, 253
MalI	GATC	1 cut(s)	30
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	8, 49
MluCI	AATT	2 cut(s)	94, 130
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	188, 234
MroXI	GAANNNNTTC	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	108, 111
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	54
SatI	GCNGC	2 cut(s)	107, 110
Sau3AI	GATC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	8, 49
SetI	ASST	5 cut(s)	49, 90, 108, 171, 180
SfcI	CTRYAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	94, 130
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	250
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	39
TasI	AATT	2 cut(s)	94, 130
TatI	WGTACW	1 cut(s)	98
TscAI	CASTG	2 cut(s)	160, 237
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	106, 109
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	160, 237
XmnI	GAANNNNTTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.