Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041107.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1145 .. 1448

Gene Structure 304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 304 bp

atggggtgtgtaattagcagagaaacgtcctcgggagtagagtctgagtctaagggtgtgaagaaggatttgagtgtggaatccaataggaaggtagatgatgttgcggtggccaaggtagatagtgaggctgaagtcgggggtgaggttgctgttggtgggggtgaggctcagaaggtggagaatggtcatgaaagtcagcggcctccaaagggggagagaaggcggtccaagccaaacccgaggagtagtctgccacataaagcccgtggtgagcaggtagctgctgggtggcctccttggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

101

Amino Acids

10.75

Weight (kDa)

7.89

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AciI	CCGC	3 cut(s)	107, 202, 226
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
Ama87I	CYCGRG	2 cut(s)	31, 241
AoxI	GGCC	3 cut(s)	111, 203, 293
ApeKI	GCWGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	155, 176, 284
AvaI	CYCGRG	2 cut(s)	31, 241
AvaII	GGWCC	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	203, 285
BlsI	GCNGC	2 cut(s)	204, 286
Bme18I	GGWCC	1 cut(s)	228
BmeT110I	CYCGRG	2 cut(s)	31, 241
BmgT120I	GGNCC	1 cut(s)	228
BsaJI	CCNNGG	5 cut(s)	30, 114, 242, 268, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseDI	CCNNGG	5 cut(s)	30, 114, 242, 268, 299
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	36, 185
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	3 cut(s)	113, 205, 295
BsiHKCI	CYCGRG	2 cut(s)	31, 241
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	3 cut(s)	113, 205, 295
BsoBI	CYCGRG	2 cut(s)	31, 241
BspACI	CCGC	3 cut(s)	107, 202, 226
BspANI	GGCC	3 cut(s)	113, 205, 295
BspCNI	CTCAG	2 cut(s)	37, 184
BspHI	TCATGA	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	268
BssECI	CCNNGG	5 cut(s)	30, 114, 242, 268, 299
BssT1I	CCWWGG	2 cut(s)	114, 299
BstDEI	CTNAG	3 cut(s)	45, 51, 171
BstDSI	CCRYGG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 301
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	113, 205, 295
BtgI	CCRYGG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	268
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	228
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	8 cut(s)	113, 131, 170, 205, 235, 266, 284, 295
CviKI_1	RGCY	8 cut(s)	113, 131, 170, 205, 235, 266, 284, 295
DdeI	CTNAG	3 cut(s)	45, 51, 171
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	114, 299
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	31, 241
EcoT14I	CCWWGG	2 cut(s)	114, 299
ErhI	CCWWGG	2 cut(s)	114, 299
FaeI	CATG	1 cut(s)	194
FaiI	YATR	2 cut(s)	192, 261
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	203, 285
Fsp4HI	GCNGC	2 cut(s)	203, 285
GluI	GCNGC	2 cut(s)	203, 285
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	113, 205, 295
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	3 cut(s)	41, 47, 80
HphI	GGTGA	3 cut(s)	155, 176, 284
Hpy188I	TCNGA	2 cut(s)	46, 174
Hpy188III	TCNNGA	2 cut(s)	33, 191
HpyAV	CCTTC	4 cut(s)	58, 85, 169, 216
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 301
HpyF3I	CTNAG	3 cut(s)	45, 51, 171
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	194
LpnPI	CCDG	2 cut(s)	263, 273
Lsp1109I	GCAGC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	26
MboII	GAAGA	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	50, 56
MnlI	CCTC	6 cut(s)	40, 121, 139, 160, 216, 237
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	232, 301
NlaIII	CATG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	204, 286
PleI	GAGTC	2 cut(s)	49, 55
PpsI	GAGTC	2 cut(s)	49, 55
PspFI	CCCAGC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	203, 285
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	50, 56
SetI	ASST	7 cut(s)	29, 96, 120, 150, 180, 282, 286
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	3 cut(s)	107, 202, 226
StyI	CCWWGG	2 cut(s)	114, 299
TaiI	ACGT	1 cut(s)	29
TasI	AATT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.