Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041164.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 621

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041164.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

cttcttgtgcgtcaattggaacccctaacggagcagcaagtgatgaatattttcaacttacagcaatcatcccagcaggctgaagatgctttgtcacaagggatggaagcattacagcagtcacttgctgagaccttggccagtggttcacctgggccatcaggaacatctgggaatgtagcaaactatatgggtcaaatggctatggcgatgggaaagctaggcactcttgaggggttccttcgccaggtttccccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

86

Amino Acids

9.11

Weight (kDa)

4.31

Isoelectric Point (pI)

77.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	151, 246
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	138, 155
ApeKI	GCWGC	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	97, 166, 205
BciT130I	CCWGG	2 cut(s)	153, 248
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	153, 248
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	21, 239
BmrFI	CCNGG	2 cut(s)	153, 248
BmsI	GCATC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	135, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	153, 248
BseDI	CCNNGG	2 cut(s)	135, 152
BseGI	GGATG	2 cut(s)	68, 108
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	72
BshFI	GGCC	2 cut(s)	140, 157
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	140, 157
Bso31I	GGTCTC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	140, 157
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	21, 239
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	135, 152
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	153, 248
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	68, 108
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	153, 248
BstSCI	CCNGG	2 cut(s)	151, 246
BstV1I	GCAGC	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	140, 157
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	68, 108
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	155
CviJI	RGCY	5 cut(s)	80, 140, 157, 203, 220
CviKI_1	RGCY	5 cut(s)	80, 140, 157, 203, 220
DdeI	CTNAG	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	151, 246
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	3 cut(s)	189, 191, 206
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	55, 115
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	140, 157
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	162, 230
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	62, 86, 138, 147, 154, 156, 165, 233
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	93, 120
MboII	GAAGA	1 cut(s)	95
MfeI	CAATTG	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	1 cut(s)	226
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	153, 248
MunI	CAATTG	1 cut(s)	14
MvaI	CCWGG	2 cut(s)	153, 248
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIV	GGNNCC	2 cut(s)	21, 239
NmuCI	GTSAC	2 cut(s)	93, 120
PdmI	GAANNNNTTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	151, 246
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	151, 246
PspN4I	GGNNCC	2 cut(s)	21, 239
PspPI	GGNCC	1 cut(s)	155
SatI	GCNGC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	153, 248
SetI	ASST	4 cut(s)	137, 154, 222, 252
SfaNI	GCATC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	14
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	151, 246
StyI	CCWWGG	1 cut(s)	135
TasI	AATT	1 cut(s)	14
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	93, 120
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	93, 120
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.