Rmu_sc0041518.1_g000001

Tyrosine kinase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041518.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 1154
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041518.1_g000001.1.cds

Sequence Viewer

Length: 326 bp
atggtatcgacgaataaagctgctggaggtggaatattattttatgattacgagtctcaggaccacgggaccccaggtttgagttgcgatcaagaatcggaacgcaccgttttgtatggtggtggtgatattatggcggaggaagacacggagagtcggtgtagcgtacctgcgggtttttcgccggctttgaccacaaagcagaaactgaaagtgaatatctacaatgaaattctggtccggcttaaggactcggatgtcgcggaggcccaacagcccggtttcgaagatgaactctgggctcatttcaatcgcctcccaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel Pkinase_Tyr

Protein Analysis

108

Amino Acids

11.86

Weight (kDa)

4.48

Isoelectric Point (pI)

67.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 178
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 137, 173, 263
AcsI RAATTY 1 cut(s) 231
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 247
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 231
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspS9I GGNCC 4 cut(s) 61, 69, 238, 268
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 3 cut(s) 61, 69, 238
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 75, 279
Bme18I GGWCC 3 cut(s) 61, 69, 238
BmgT120I GGNCC 4 cut(s) 61, 69, 238, 268
BmiI GGNNCC 2 cut(s) 70, 71
BmrFI CCNGG 2 cut(s) 75, 279
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 64, 73
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 184
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 64, 73
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 269
BsiSI CCGG 3 cut(s) 185, 241, 279
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 3 cut(s) 137, 173, 263
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 70, 71
BspMI ACCTGC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 285
BspTI CTTAAG 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 64, 73
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 109
BstAFI CTTAAG 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 277
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 262
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 4 cut(s) 61, 69, 238, 268
Csp6I GTAC 1 cut(s) 167
CviJI RGCY 6 cut(s) 20, 188, 244, 269, 277, 302
CviKI_1 RGCY 6 cut(s) 20, 188, 244, 269, 277, 302
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 3 cut(s) 61, 69, 238
EcoO109I RGGNCCY 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 304
FaiI YATR 3 cut(s) 45, 117, 134
FaqI GGGAC 1 cut(s) 82
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 269
HapII CCGG 3 cut(s) 185, 241, 279
HinfI GANTC 4 cut(s) 53, 95, 154, 251
HpaII CCGG 3 cut(s) 185, 241, 279
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 100, 256
Hpy188III TCNNGA 2 cut(s) 59, 92
Hpy99I CGWCG 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 57
KflI GGGWCCC 1 cut(s) 69
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 88
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 324
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 155, 299
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 231
MlyI GAGTC 3 cut(s) 62, 163, 245
MnlI CCTC 4 cut(s) 20, 133, 259, 326
MroNI GCCGGC 1 cut(s) 184
MseI TTAA 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 3 cut(s) 185, 241, 279
MspR9I CCNGG 2 cut(s) 75, 279
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 263
NaeI GCCGGC 1 cut(s) 186
NciI CCSGG 1 cut(s) 279
NdeII GATC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 70, 71
NspV TTCGAA 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 3 cut(s) 61, 162, 245
PpsI GAGTC 3 cut(s) 61, 162, 245
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 70, 71
PspPI GGNCC 4 cut(s) 61, 69, 238, 268
PspPPI RGGWCCY 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 4 cut(s) 61, 69, 238, 268
SchI GAGTC 3 cut(s) 62, 163, 245
ScrFI CCNGG 2 cut(s) 75, 279
SduI GDGCHC 1 cut(s) 304
SetI ASST 4 cut(s) 22, 31, 79, 172
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 3 cut(s) 61, 69, 238
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 231
SsiI CCGC 3 cut(s) 137, 173, 263
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 73, 277
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 8, 285
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 243, 306
TspGWI ACGGA 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 3 cut(s) 61, 69, 238
XapI RAATTY 1 cut(s) 231
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.