Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042747.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3964 .. 4533

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042747.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgaaagttagagatctaatagccaaaggtttgaaagttaaacttgggtacaatgtggcaggtactataccacatgagattggtgatctttcaaaattacaggttttgtcacttccaggtgttaatgttcatggtgttatcccatccacaatcttcaacatgtcctcgctgataggaatatcgctggctagtaatcagctctcaggtagcctcccagcaaacataggccttggggttccacatctaaagcagcttcttgtatcagggaataacctcactggagcaattccaaacttcatatctaatgcctctaacatcataaccatagacatggccgctaactatttttcggggtttattcctagcaagctctgtgccttaccataccttgagcgcctaaacttagcagagaattatttgactattgatacttctgctccagaagtcaacatattttcttgcttgtccaatcttcaaaatttagggacgctgttactggcaaaaaaatccactaaatgccatgcttcccatttcctttgccaacctctctacatcacttcaatatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

20.18

Weight (kDa)

8.91

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AciI	CCGC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	478
AfaI	GTAC	2 cut(s)	50, 64
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	34, 93, 157, 476, 561
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	3 cut(s)	199, 253, 370
AluI	AGCT	3 cut(s)	199, 253, 370
AoxI	GGCC	2 cut(s)	226, 333
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	117
BfaI	CTAG	2 cut(s)	189, 363
BfoI	RGCGCY	1 cut(s)	397
BfuAI	ACCTGC	1 cut(s)	50
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	2 cut(s)	251, 336
BlsI	GCNGC	2 cut(s)	252, 337
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	300, 423
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bse1I	ACTGG	2 cut(s)	283, 501
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	283, 501
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	214
BshFI	GGCC	2 cut(s)	228, 335
BslFI	GGGAC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	228, 335
Bsp143I	GATC	2 cut(s)	13, 85
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	228, 335
BspCNI	CTCAG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	283, 501
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	13, 85
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	186, 368
BstDEI	CTNAG	2 cut(s)	202, 403
BstF5I	GGATG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	16, 88
BstMBI	GATC	2 cut(s)	13, 85
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	228, 335
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	186, 368
CfoI	GCGC	1 cut(s)	396
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	49, 63
CviAII	CATG	5 cut(s)	74, 131, 160, 331, 521
CviJI	RGCY	8 cut(s)	23, 188, 199, 210, 228, 253, 335, 370
CviKI_1	RGCY	8 cut(s)	23, 188, 199, 210, 228, 253, 335, 370
CviQI	GTAC	2 cut(s)	49, 63
DdeI	CTNAG	2 cut(s)	202, 403
DpnI	GATC	2 cut(s)	15, 87
DpnII	GATC	2 cut(s)	13, 85
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	5 cut(s)	77, 134, 163, 334, 524
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	5 cut(s)	73, 130, 159, 330, 520
Fnu4HI	GCNGC	2 cut(s)	251, 336
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	251, 336
FspBI	CTAG	2 cut(s)	189, 363
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	2 cut(s)	251, 336
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	300, 423
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	228, 335
HgaI	GACGC	1 cut(s)	496
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	5 cut(s)	77, 134, 163, 334, 524
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	1 cut(s)	448
HpyF3I	CTNAG	2 cut(s)	202, 403
Hsp92II	CATG	5 cut(s)	77, 134, 163, 334, 524
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	13, 85
LmnI	GCTCC	2 cut(s)	281, 442
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	189, 363
MaeIII	GTNAC	2 cut(s)	108, 492
MalI	GATC	2 cut(s)	15, 87
MboI	GATC	2 cut(s)	13, 85
MboII	GAAGA	2 cut(s)	145, 464
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	4 cut(s)	95, 285, 412, 478
MnlI	CCTC	5 cut(s)	175, 221, 284, 319, 555
MseI	TTAA	2 cut(s)	39, 123
MslI	CAYNNNNRTG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	13, 85
NlaIII	CATG	5 cut(s)	77, 134, 163, 334, 524
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	228
PciI	ACATGT	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	252, 337
PscI	ACATGT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	50, 64
RsaNI	GTAC	2 cut(s)	49, 63
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	39, 123
SatI	GCNGC	2 cut(s)	251, 336
Sau3AI	GATC	2 cut(s)	13, 85
ScrFI	CCNGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	95, 285, 412, 478
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	2 cut(s)	189, 363
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	229
TasI	AATT	4 cut(s)	95, 285, 412, 478
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	39, 123
Tru9I	TTAA	2 cut(s)	39, 123
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	3 cut(s)	17, 119, 286
TspRI	CASTG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	478
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	189, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.