Rmu_sc0042817.1_g000001

Leucine-rich repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042817.1
N/A
Physical Location & Seq
Forward (+)
1 .. 634
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042817.1_g000001.1.cds

Sequence Viewer

Length: 328 bp
gttcgtgcccgatgaggtatacaaaagcgtgaatgcggttggtgaagacgagaagtggtgggaggctgtggagctacacaagctgattctagctcataatgaaattgaattgctcaaagatgagctgaggaatttgcctctactgactgtgttgaatgtcagccacaataaactttccgagcttccggcggcaatcggagagcttactgtgctgaaatcattagacgtgtcattcaactcaattctagagctgcctgaggaaattggatcagcaactgctcttgtcaagtatggttccttatacggatatatatactatggacgctag
Functional Annotation

Protein Analysis

108

Amino Acids

12.16

Weight (kDa)

4.74

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AciI CCGC 2 cut(s) 36, 189
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 3 cut(s) 108, 155, 236
AjiI CACGTC 1 cut(s) 227
AluBI AGCT 7 cut(s) 74, 83, 93, 125, 182, 203, 251
AluI AGCT 7 cut(s) 74, 83, 93, 125, 182, 203, 251
AlwI GGATC 1 cut(s) 275
AlwNI CAGNNNCTG 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 54
AxyI CCTNAGG 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 52
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 238
BfaI CTAG 3 cut(s) 90, 246, 326
BisI GCNGC 2 cut(s) 190, 252
BlsI GCNGC 2 cut(s) 191, 253
BmgBI CACGTC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 126
Bse21I CCTNAGG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 117, 247
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 186
BsmI GAATGC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 36, 189
BspCNI CTCAG 2 cut(s) 118, 248
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 1 cut(s) 275
BssMI GATC 1 cut(s) 267
BssNAI GTATAC 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 149, 209
BstDEI CTNAG 2 cut(s) 126, 256
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 80, 209
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 20
Bsu36I CCTNAGG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 227
CaiI CAGNNNCTG 1 cut(s) 276
CviJI RGCY 9 cut(s) 66, 74, 83, 93, 125, 163, 182, 203, 251
CviKI_1 RGCY 9 cut(s) 66, 74, 83, 93, 125, 163, 182, 203, 251
DdeI CTNAG 2 cut(s) 126, 256
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 256
FaiI YATR 8 cut(s) 20, 97, 292, 302, 310, 312, 314, 319
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 190, 252
Fsp4HI GCNGC 2 cut(s) 190, 252
FspBI CTAG 3 cut(s) 90, 246, 326
GluI GCNGC 2 cut(s) 190, 252
HapII CCGG 1 cut(s) 186
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 179, 198
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 149, 209
HpyCH4IV ACGT 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 209
HpyF3I CTNAG 2 cut(s) 126, 256
HpySE526I ACGT 1 cut(s) 226
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 199, 268
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 3 cut(s) 90, 246, 326
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 5 cut(s) 103, 108, 131, 241, 262
MnlI CCTC 5 cut(s) 8, 56, 121, 148, 251
MspI CCGG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 80, 209
NdeII GATC 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 296
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 191, 253
PspN4I GGNNCC 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 276
SatI GCNGC 2 cut(s) 190, 252
Sau3AI GATC 1 cut(s) 267
SduI GDGCHC 1 cut(s) 10
SetI ASST 9 cut(s) 19, 76, 85, 95, 127, 184, 205, 229, 253
Sse9I AATT 5 cut(s) 103, 108, 131, 241, 262
SsiI CCGC 2 cut(s) 36, 189
SspMI CTAG 3 cut(s) 90, 246, 326
TaaI ACNGT 2 cut(s) 149, 209
TaiI ACGT 1 cut(s) 229
TasI AATT 5 cut(s) 103, 108, 131, 241, 262
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 86
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 319
XapI RAATTY 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 3 cut(s) 90, 246, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.