Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042927.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7956 .. 8727

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042927.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgttttccattcaggacacgccaaatggctttactagaccatatattggggaatcagtagattctgtaaacggtctagcagcttgtgtcgttcctgcgctccattgcattctgcaacaaaatgccatgcaaatggaagaaacaatgagattgattgaagttgttgatcaaatcacaggcaatcacgcagagctcgcagaggcagtaacaagtaaaaagcagatgcagttgtcttcagcttctgcaagggagagagtcctagaagctcatgtgatttctattgaaaataggattgagaaactagttgtcgagttgcagatacaaaagatgaaaaataccaaggtctgtatctattactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

13.52

Weight (kDa)

5.57

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	158, 284
AhlI	ACTAGT	1 cut(s)	301
AluBI	AGCT	4 cut(s)	83, 193, 239, 266
AluI	AGCT	4 cut(s)	83, 193, 239, 266
Alw21I	GWGCWC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	4 cut(s)	36, 77, 260, 302
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	100
CviAII	CATG	2 cut(s)	127, 269
CviJI	RGCY	5 cut(s)	30, 83, 193, 239, 266
CviKI_1	RGCY	5 cut(s)	30, 83, 193, 239, 266
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	2 cut(s)	130, 272
FaiI	YATR	4 cut(s)	43, 45, 128, 270
FatI	CATG	2 cut(s)	126, 268
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	4 cut(s)	36, 77, 260, 302
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	130, 272
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	3 cut(s)	53, 62, 255
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	6 cut(s)	108, 115, 130, 226, 245, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	130, 272
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	3 cut(s)	108, 162, 343
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	4 cut(s)	36, 77, 260, 302
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	149, 225
MhlI	GDGCHC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	130, 272
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	53, 62
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	5 cut(s)	85, 195, 241, 268, 345
SfaNI	GCATC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	301
SspMI	CTAG	4 cut(s)	36, 77, 260, 302
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	53, 62
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	47
XspI	CTAG	4 cut(s)	36, 77, 260, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.