Rmu_ssc0000003.1_g000005

Protein kinase domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000003.1
N/A
Physical Location & Seq
Forward (+)
10389 .. 16047
5659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000003.1_g000005.1.cds

Sequence Viewer

Length: 1959 bp
atgtctgaaaacccaaaaatacgtttcggcatattaggatgtgcggacatagctagaaaggtagctcgcgccataaacctggcacccaattcgaccctgtacgccattgcgagccgctccatcgagaaagcccacaaattcgcagccaacaatggactgtccactcagaccctcaaaatctacggcagctatgatcagctgctcgatgacccatgtgtcgatgctgtgtacatgcctctgcccactagtcttcaccttcactgggctgtcttggctgcccgcaagaagaagcacttgctcttggaaaaaccagcggctcttgatgtgggtgagcttgatcagatactccaagcttgccaatccaacggtgtacagttcatgagtgggagtatgtggctgcatcaccctaggactgccaaattgaaggacttgatctctgattccaagctctttggtcaaatcaactacattcatagctcatcaacacttcctggaaccaaggaatttttggagaacaacataagagtgaaaccagatttagaacctctcggtgcgcttgggagcctaggctggatgtctccgaatatggtggcgtgcatcgcagtggaggcaatatcaattctagaaaagcttcactcaaaagggtttgtgcatggagatgtaaaacctgagaatttcttacttggtcaacctggaacagctgatgagaagaagttatatcttattgatcttggtttggcatcgagatggaaggaatcatcatcaagtcaacatgttgaatatgatcagaggcctgacatattcagggggacaataagatatgcaagtgttcatgcacatttaggtcggactggaagtcgaagggacgatcttgagtcgttggcatacacattaatatttctcataaaaggaaggttaccctggcaggggtatcagggtgataacaagagtttccttgtatgtaagaagaagatgtccacatccccagagttgatgtgctgtttctgccctcccccatttaaacagtttcttgaagctgttacaattatgaagtttgatgaagagccaaactatgcaaagttgatatccttttttgaaagcttgatcgaaccatgtgttccgctaagaccaattagaattgatggagctctgaaggttgggcagaaacggggaagaattgcactaaatttcgaagatgatgaacaaccgaagaagaaagtccgattaggtagtccggctacccagtggatttcagtgtataatgcacgccgtcccatgaagcaaagatatcactataatgtggcagactcaaggctgcgccaacatgttgacaagggtaatgaagatggactgtatattagctctgtagcctctgcagcaaatctgtgggctctaatcatggatgcagggacaggtttctcttcccaggtttatgagttgtcagctgtcttcctgcataaggattggatcatggagcagtgggaaaaaaatttctatattagttcaatagcgggtgtgaataatgggagttccttggttgttatgtccaaagggactccctacacccagcagtcatacaaagtgagtgaatcttttcctttcaagtggataaataagaagtggaaagaaggtttccatgtaacgtctatgacaactgctggtaaccgctggggtgtggttatgtccagaaatgctggattttctgatcaggttgtggagcttgattttttatacccaagtgaaggtatacacagacgatgggagagtggttataggataacatctatggctgcgacttctgatcaagcagccttcattttgagtataccaaaacgtaaattgatggatgaaactcaagagactctgcgtacctctgccttcccaagcagccatgtaaaggaaaaatggtccaaaaatttatatattgcctcaatttgttttggacggactgtttgctaa

Protein Analysis

652

Amino Acids

73.36

Weight (kDa)

9.14

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 1747, 1825
AccII CGCG 1 cut(s) 69
AciI CCGC 7 cut(s) 44, 115, 280, 314, 1121, 1511, 1666
AclWI GGATC 1 cut(s) 1475
AcsI RAATTY 6 cut(s) 137, 503, 673, 1186, 1489, 1915
AcuI CTGAAG 1 cut(s) 1172
AfaI GTAC 4 cut(s) 101, 230, 372, 1870
AfiI CCNNNNNNNGG 6 cut(s) 262, 926, 927, 1459, 1742, 1897
AflIII ACRYGT 2 cut(s) 772, 1324
AgsI TTSAA 6 cut(s) 424, 779, 1034, 1097, 1506, 1603
AhdI GACNNNNNGTC 1 cut(s) 855
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 5 cut(s) 78, 490, 691, 920, 1425
Alw21I GWGCWC 1 cut(s) 1150
Alw26I GTCTC 2 cut(s) 582, 1853
AlwI GGATC 1 cut(s) 1475
AoxI GGCC 1 cut(s) 791
ApoI RAATTY 6 cut(s) 137, 503, 673, 1186, 1489, 1915
ArsI GACNNNNNNTTYG 1 cut(s) 1935
AseI ATTAAT 1 cut(s) 893
Asp700I GAANNNNTTC 2 cut(s) 630, 1593
AspA2I CCTAGG 2 cut(s) 407, 565
AspLEI GCGC 3 cut(s) 71, 556, 1320
AspS9I GGNCC 1 cut(s) 1908
AsuHPI GGTGA 4 cut(s) 245, 341, 395, 950
AsuII TTCGAA 1 cut(s) 1191
AvaII GGWCC 1 cut(s) 1908
AvrII CCTAGG 2 cut(s) 407, 565
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 2 cut(s) 1150, 1393
BbsI GAAGAC 2 cut(s) 242, 1441
Bbv12I GWGCWC 1 cut(s) 1150
BccI CCATC 6 cut(s) 128, 741, 1136, 1340, 1752, 1837
BceAI ACGGC 2 cut(s) 199, 1254
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 5 cut(s) 80, 492, 693, 922, 1427
BclI TGATCA 5 cut(s) 193, 337, 784, 1705, 1801
BcoDI GTCTC 2 cut(s) 582, 1853
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 5 cut(s) 54, 246, 408, 566, 623
BfmI CTRYAG 2 cut(s) 1365, 1374
BlnI CCTAGG 2 cut(s) 407, 565
Bme1390I CCNGG 5 cut(s) 80, 492, 693, 922, 1427
Bme18I GGWCC 1 cut(s) 1908
BmeRI GACNNNNNGTC 1 cut(s) 855
BmgT120I GGNCC 1 cut(s) 1908
BmiI GGNNCC 3 cut(s) 84, 496, 563
BmrFI CCNGG 5 cut(s) 80, 492, 693, 922, 1427
BmrI ACTGGG 2 cut(s) 271, 1237
BmsI GCATC 5 cut(s) 211, 409, 606, 749, 1393
BmuI ACTGGG 2 cut(s) 271, 1237
BpiI GAAGAC 2 cut(s) 242, 1441
Bpu14I TTCGAA 1 cut(s) 1191
BpuEI CTTGAG 3 cut(s) 893, 1294, 1839
BsaJI CCNNGG 6 cut(s) 407, 498, 565, 920, 1425, 1533
Bsc4I CCNNNNNNNGG 6 cut(s) 262, 926, 927, 1459, 1742, 1897
Bse1I ACTGG 3 cut(s) 266, 856, 1243
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 5 cut(s) 80, 492, 693, 922, 1427
BseDI CCNNGG 6 cut(s) 407, 498, 565, 920, 1425, 1533
BseGI GGATG 5 cut(s) 44, 579, 980, 1408, 1852
BseLI CCNNNNNNNGG 6 cut(s) 262, 926, 927, 1459, 1742, 1897
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 179, 660
BseNI ACTGG 3 cut(s) 266, 856, 1243
BseYI CCCAGC 2 cut(s) 1566, 1668
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 793
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 1150
BsiSI CCGG 1 cut(s) 1235
BslFI GGGAC 5 cut(s) 823, 878, 1257, 1423, 1567
BslI CCNNNNNNNGG 6 cut(s) 262, 926, 927, 1459, 1742, 1897
BsmAI GTCTC 2 cut(s) 582, 1853
BsmFI GGGAC 5 cut(s) 823, 878, 1257, 1423, 1567
BsnI GGCC 1 cut(s) 793
Bsp119I TTCGAA 1 cut(s) 1191
Bsp1286I GDGCHC 2 cut(s) 1150, 1393
Bsp1407I TGTACA 2 cut(s) 228, 370
BspACI CCGC 7 cut(s) 44, 115, 280, 314, 1121, 1511, 1666
BspANI GGCC 1 cut(s) 793
BspCNI CTCAG 2 cut(s) 178, 661
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 84, 496, 563
BspMAI CTGCAG 1 cut(s) 1378
BspPI GGATC 1 cut(s) 1475
BspQI GCTCTTC 1 cut(s) 1056
BspT104I TTCGAA 1 cut(s) 1191
BspT107I GGYRCC 1 cut(s) 82
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 105
BsrGI TGTACA 2 cut(s) 228, 370
BsrI ACTGG 3 cut(s) 266, 856, 1243
BssECI CCNNGG 6 cut(s) 407, 498, 565, 920, 1425, 1533
BssNAI GTATAC 2 cut(s) 1748, 1826
BssT1I CCWWGG 4 cut(s) 407, 498, 565, 1533
Bst1107I GTATAC 2 cut(s) 1748, 1826
Bst2UI CCWGG 5 cut(s) 80, 492, 693, 922, 1427
Bst4CI ACNGT 6 cut(s) 159, 368, 375, 1026, 1353, 1951
Bst6I CTCTTC 2 cut(s) 1056, 1426
BstAUI TGTACA 2 cut(s) 228, 370
BstBI TTCGAA 1 cut(s) 1191
BstC8I GCNNGC 6 cut(s) 67, 112, 280, 355, 595, 1267
BstDEI CTNAG 3 cut(s) 165, 669, 1124
BstEII GGTNACC 2 cut(s) 915, 1661
BstENI CCTNNNNNAGG 1 cut(s) 1457
BstF5I GGATG 5 cut(s) 44, 579, 980, 1408, 1852
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 3 cut(s) 71, 556, 1320
BstMAI GTCTC 2 cut(s) 582, 1853
BstMWI GCNNNNNNNGC 6 cut(s) 50, 272, 599, 608, 1005, 1376
BstNI CCWGG 5 cut(s) 80, 492, 693, 922, 1427
BstNSI RCATGY 3 cut(s) 235, 776, 1328
BstPI GGTNACC 2 cut(s) 915, 1661
BstSCI CCNGG 5 cut(s) 78, 490, 691, 920, 1425
BstSFI CTRYAG 2 cut(s) 1365, 1374
BstUI CGCG 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 242, 1441
BstXI CCANNNNNNTGG 1 cut(s) 79
BstZ17I GTATAC 2 cut(s) 1748, 1826
BsuRI GGCC 1 cut(s) 793
BtgZI GCGATG 1 cut(s) 583
BtsCI GGATG 5 cut(s) 44, 579, 980, 1408, 1852
BtsI GCAGTG 2 cut(s) 609, 1484
BtsIMutI CAGTG 5 cut(s) 259, 609, 1250, 1260, 1484
Cac8I GCNNGC 6 cut(s) 67, 112, 280, 355, 595, 1267
CciI TCATGA 1 cut(s) 378
CfoI GCGC 3 cut(s) 71, 556, 1320
Cfr13I GGNCC 1 cut(s) 1908
Csp6I GTAC 4 cut(s) 100, 229, 371, 1869
CviQI GTAC 4 cut(s) 100, 229, 371, 1869
DdeI CTNAG 3 cut(s) 165, 669, 1124
DraI TTTAAA 1 cut(s) 1021
DrdI GACNNNNNNGTC 1 cut(s) 215
DriI GACNNNNNGTC 1 cut(s) 855
DseDI GACNNNNNNGTC 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 1056, 1426
Eam1105I GACNNNNNGTC 1 cut(s) 855
EarI CTCTTC 2 cut(s) 1056, 1426
Ecl136II GAGCTC 1 cut(s) 1148
Eco130I CCWWGG 4 cut(s) 407, 498, 565, 1533
Eco147I AGGCCT 1 cut(s) 793
Eco24I GRGCYC 2 cut(s) 1150, 1393
Eco32I GATATC 2 cut(s) 1086, 1289
Eco47I GGWCC 1 cut(s) 1908
Eco53kI GAGCTC 1 cut(s) 1148
Eco57I CTGAAG 1 cut(s) 1172
Eco91I GGTNACC 2 cut(s) 915, 1661
EcoICRI GAGCTC 1 cut(s) 1148
EcoNI CCTNNNNNAGG 1 cut(s) 1457
EcoO65I GGTNACC 2 cut(s) 915, 1661
EcoRII CCWGG 5 cut(s) 78, 490, 691, 920, 1425
EcoRV GATATC 2 cut(s) 1086, 1289
EcoT14I CCWWGG 4 cut(s) 407, 498, 565, 1533
EcoT38I GRGCYC 2 cut(s) 1150, 1393
ErhI CCWWGG 4 cut(s) 407, 498, 565, 1533
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 5 cut(s) 823, 878, 1257, 1423, 1567
FauI CCCGC 2 cut(s) 287, 1504
FbaI TGATCA 5 cut(s) 193, 337, 784, 1705, 1801
FblI GTMKAC 2 cut(s) 1747, 1825
FokI GGATG 5 cut(s) 51, 586, 967, 1415, 1859
FriOI GRGCYC 2 cut(s) 1150, 1393
FspBI CTAG 5 cut(s) 54, 246, 408, 566, 623
GlaI GCGC 3 cut(s) 70, 555, 1319
GsaI CCCAGC 2 cut(s) 1570, 1672
HaeIII GGCC 1 cut(s) 793
HapII CCGG 1 cut(s) 1235
HhaI GCGC 3 cut(s) 71, 556, 1320
Hin6I GCGC 3 cut(s) 69, 554, 1318
HinP1I GCGC 3 cut(s) 69, 554, 1318
HincII GTYRAC 3 cut(s) 689, 770, 1330
HindII GTYRAC 3 cut(s) 689, 770, 1330
HindIII AAGCTT 3 cut(s) 351, 629, 1099
HinfI GANTC 7 cut(s) 440, 755, 875, 1307, 1555, 1589, 1861
HpaII CCGG 1 cut(s) 1235
HphI GGTGA 4 cut(s) 245, 341, 395, 950
Hpy166II GTNNAC 9 cut(s) 162, 229, 371, 689, 770, 978, 1330, 1748, 1826
Hpy188III TCNNGA 9 cut(s) 124, 320, 379, 623, 744, 872, 1031, 1686, 1856
Hpy8I GTNNAC 9 cut(s) 162, 229, 371, 689, 770, 978, 1330, 1748, 1826
HpyCH4III ACNGT 6 cut(s) 159, 368, 375, 1026, 1353, 1951
HpyCH4IV ACGT 3 cut(s) 22, 1643, 1834
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 272, 599, 608, 1005, 1376
HpyF3I CTNAG 3 cut(s) 165, 669, 1124
HpySE526I ACGT 3 cut(s) 22, 1643, 1834
HspAI GCGC 3 cut(s) 69, 554, 1318
Ksp22I TGATCA 5 cut(s) 193, 337, 784, 1705, 1801
LguI GCTCTTC 1 cut(s) 1056
LmnI GCTCC 5 cut(s) 122, 561, 1145, 1474, 1717
LweI GCATC 5 cut(s) 211, 409, 606, 749, 1393
MaeI CTAG 5 cut(s) 54, 246, 408, 566, 623
MaeII ACGT 3 cut(s) 22, 1643, 1834
MaeIII GTNAC 4 cut(s) 915, 1039, 1639, 1661
MbiI CCGCTC 1 cut(s) 117
MhlI GDGCHC 2 cut(s) 1150, 1393
MlyI GAGTC 4 cut(s) 884, 1301, 1549, 1855
MmeI TCCRAC 2 cut(s) 387, 827
MnlI CCTC 9 cut(s) 182, 246, 555, 601, 783, 1020, 1381, 1882, 1939
MroXI GAANNNNTTC 2 cut(s) 630, 1593
MseI TTAA 2 cut(s) 893, 1020
MslI CAYNNNNRTG 5 cut(s) 524, 602, 657, 745, 1296
MspA1I CMGCKG 5 cut(s) 199, 314, 701, 1445, 1668
MspI CCGG 1 cut(s) 1235
MspR9I CCNGG 5 cut(s) 80, 492, 693, 922, 1427
MvaI CCWGG 5 cut(s) 80, 492, 693, 922, 1427
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 6 cut(s) 50, 272, 599, 608, 1005, 1376
NlaIV GGNNCC 3 cut(s) 84, 496, 563
NspI RCATGY 3 cut(s) 235, 776, 1328
NspV TTCGAA 1 cut(s) 1191
PagI TCATGA 1 cut(s) 378
PceI AGGCCT 1 cut(s) 793
PciI ACATGT 2 cut(s) 772, 1324
PciSI GCTCTTC 1 cut(s) 1056
PdmI GAANNNNTTC 2 cut(s) 630, 1593
PfeI GAWTC 3 cut(s) 440, 755, 1589
PfoI TCCNGGA 1 cut(s) 490
PleI GAGTC 4 cut(s) 883, 1301, 1549, 1855
PpsI GAGTC 4 cut(s) 883, 1301, 1549, 1855
PscI ACATGT 2 cut(s) 772, 1324
PshBI ATTAAT 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 1150
Psp6I CCWGG 5 cut(s) 78, 490, 691, 920, 1425
PspEI GGTNACC 2 cut(s) 915, 1661
PspFI CCCAGC 2 cut(s) 1566, 1668
PspGI CCWGG 5 cut(s) 78, 490, 691, 920, 1425
PspN4I GGNNCC 3 cut(s) 84, 496, 563
PspPI GGNCC 1 cut(s) 1908
PstI CTGCAG 1 cut(s) 1378
PvuII CAGCTG 3 cut(s) 199, 701, 1445
RsaI GTAC 4 cut(s) 101, 230, 372, 1870
RsaNI GTAC 4 cut(s) 100, 229, 371, 1869
RseI CAYNNNNRTG 5 cut(s) 524, 602, 657, 745, 1296
SacI GAGCTC 1 cut(s) 1150
SapI GCTCTTC 1 cut(s) 1056
SaqAI TTAA 2 cut(s) 893, 1020
Sau96I GGNCC 1 cut(s) 1908
SchI GAGTC 4 cut(s) 884, 1301, 1549, 1855
ScrFI CCNGG 5 cut(s) 80, 492, 693, 922, 1427
SduI GDGCHC 2 cut(s) 1150, 1393
SfaNI GCATC 5 cut(s) 211, 409, 606, 749, 1393
SfcI CTRYAG 2 cut(s) 1365, 1374
SfuI TTCGAA 1 cut(s) 1191
SinI GGWCC 1 cut(s) 1908
SmiMI CAYNNNNRTG 5 cut(s) 524, 602, 657, 745, 1296
SmlI CTYRAG 3 cut(s) 872, 1309, 1854
SmoI CTYRAG 3 cut(s) 872, 1309, 1854
SpeI ACTAGT 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 7 cut(s) 44, 115, 280, 314, 1121, 1511, 1666
SspI AATATT 1 cut(s) 897
SspMI CTAG 5 cut(s) 54, 246, 408, 566, 623
SstI GAGCTC 1 cut(s) 1150
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 5 cut(s) 78, 490, 691, 920, 1425
StyI CCWWGG 4 cut(s) 407, 498, 565, 1533
TaaI ACNGT 6 cut(s) 159, 368, 375, 1026, 1353, 1951
TaiI ACGT 3 cut(s) 25, 1646, 1837
TaqI TCGA 8 cut(s) 92, 123, 204, 219, 743, 859, 1107, 1191
TatI WGTACW 2 cut(s) 228, 370
TauI GCSGC 2 cut(s) 117, 317
TfiI GAWTC 3 cut(s) 440, 755, 1589
Tru1I TTAA 2 cut(s) 893, 1020
Tru9I TTAA 2 cut(s) 893, 1020
TscAI CASTG 5 cut(s) 266, 609, 1250, 1260, 1484
TspRI CASTG 5 cut(s) 266, 609, 1250, 1260, 1484
VpaK11BI GGWCC 1 cut(s) 1908
VspI ATTAAT 1 cut(s) 893
XagI CCTNNNNNAGG 1 cut(s) 1457
XapI RAATTY 6 cut(s) 137, 503, 673, 1186, 1489, 1915
XbaI TCTAGA 1 cut(s) 622
XceI RCATGY 3 cut(s) 235, 776, 1328
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmaJI CCTAGG 2 cut(s) 407, 565
XmiI GTMKAC 2 cut(s) 1747, 1825
XmnI GAANNNNTTC 2 cut(s) 630, 1593
XspI CTAG 5 cut(s) 54, 246, 408, 566, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.