Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000007.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

39910 .. 43387

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgtcgttttgccctctaacatcacccctctctctgtcgtttaacgtcctcccctcaatatccgtgaggtccaccgtgcccaattgcccataccactacgtaatgccagctcgccaccctggaggggcattatcgtcattaggccccacggccaccgacgaccaccaacttgttactgatagtgatgacacgtcgcccacacgtccatcacttcactggcgggacccgcacgacgtggccatgtcagatccgacgcaacacacaagtgtgcccacacgcgctttgcccgcgaaagtctcagccgtatacgagtttgttggactaaatgaactatattatgctggtagtcatgggatggacataatgggccctgttagacaatcagtagttggtgaccatagacatggctttcagtctactgacagacagggcaaggatgttaatctgttccagcctgcagcagagtttttacctatgattggcgaggttcttaaatccctagtagaaactaccaaagacattgaaggagctaaagttgagaataacaagttctgtgtctctgtacactaccgcaatgtagatgagaagtattgggctgtagttgcacagcgtgttcatgacattcttaaaaactacccacgcctgcggttgactcatggacggaaggttttagaggtccgaccagtgataaattgggataaagggaaggcagtcacatttttacttgaatctcttgggctaagtgattgtgaagatgtgctcccaatatatattggagatgaccgcaccgatgaagatgcattcaaggttctgagggaaggaaacaggggttatggcattttagtctctgctgtgccaaaggaaagcaatgcattttactcactaagggacccctcagaggtgatggagtttctgaagtcactggtgatatggaggaagtcaagtgctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0034637 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

317

Amino Acids

35.35

Weight (kDa)

6.18

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	100 - 299	2.2e-51	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	306, 416
AccII	CGCG	2 cut(s)	279, 290
AciI	CCGC	6 cut(s)	220, 227, 288, 571, 646, 784
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	2 cut(s)	150, 237
AcuI	CTGAAG	1 cut(s)	935
AdeI	CACNNNGTG	2 cut(s)	235, 611
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	3 cut(s)	124, 479, 898
AflIII	ACRYGT	2 cut(s)	189, 200
AgsI	TTSAA	3 cut(s)	524, 728, 805
AjiI	CACGTC	3 cut(s)	192, 203, 235
AjnI	CCWGG	1 cut(s)	118
AleI	CACNNNNGTG	2 cut(s)	264, 266
AluBI	AGCT	2 cut(s)	110, 530
AluI	AGCT	2 cut(s)	110, 530
Alw21I	GWGCWC	2 cut(s)	762, 949
Alw26I	GTCTC	3 cut(s)	301, 562, 850
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	4 cut(s)	142, 150, 237, 367
ApaI	GGGCCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	7 cut(s)	69, 143, 223, 367, 368, 676, 889
AsuHPI	GGTGA	4 cut(s)	15, 404, 913, 937
AvaII	GGWCC	4 cut(s)	69, 223, 676, 889
BaeGI	GKGCMC	3 cut(s)	81, 273, 371
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	762, 949
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	3 cut(s)	214, 349, 898
BceAI	ACGGC	2 cut(s)	165, 287
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	301, 562, 850
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	456, 597
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	4 cut(s)	69, 223, 676, 889
BmgBI	CACGTC	3 cut(s)	192, 203, 235
BmgT120I	GGNCC	7 cut(s)	69, 143, 223, 367, 368, 676, 889
BmiI	GGNNCC	6 cut(s)	145, 224, 225, 369, 890, 891
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	118, 147
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 479, 898
Bse1I	ACTGG	3 cut(s)	221, 683, 927
Bse3DI	GCAATG	2 cut(s)	580, 874
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	118, 147
BseGI	GGATG	2 cut(s)	360, 442
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	124, 479, 898
BseMI	GCAATG	2 cut(s)	580, 874
BseMII	CTCAG	3 cut(s)	312, 803, 909
BseNI	ACTGG	3 cut(s)	221, 683, 927
BseSI	GKGCMC	3 cut(s)	81, 273, 371
BseXI	GCAGC	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	279, 290
BshFI	GGCC	4 cut(s)	144, 152, 239, 369
BsiHKAI	GWGCWC	2 cut(s)	762, 949
BslFI	GGGAC	2 cut(s)	236, 902
BslI	CCNNNNNNNGG	3 cut(s)	124, 479, 898
BsmAI	GTCTC	3 cut(s)	301, 562, 850
BsmFI	GGGAC	2 cut(s)	236, 902
BsmI	GAATGC	1 cut(s)	800
BsnI	GGCC	4 cut(s)	144, 152, 239, 369
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	5 cut(s)	81, 273, 371, 762, 949
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	6 cut(s)	220, 227, 288, 571, 646, 784
BspANI	GGCC	4 cut(s)	144, 152, 239, 369
BspCNI	CTCAG	3 cut(s)	311, 804, 908
BspFNI	CGCG	2 cut(s)	279, 290
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	6 cut(s)	145, 224, 225, 369, 890, 891
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	580, 874
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	3 cut(s)	221, 683, 927
BssECI	CCNNGG	2 cut(s)	118, 147
BssMI	GATC	1 cut(s)	247
BssNAI	GTATAC	1 cut(s)	307
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	5 cut(s)	108, 112, 288, 456, 644
BstDEI	CTNAG	5 cut(s)	298, 740, 812, 884, 895
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	360, 442
BstFNI	CGCG	2 cut(s)	279, 290
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	3 cut(s)	301, 562, 850
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 287, 602
BstNI	CCWGG	1 cut(s)	120
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	2 cut(s)	456, 597
BstSLI	GKGCMC	3 cut(s)	81, 273, 371
BstSNI	TACGTA	1 cut(s)	100
BstUI	CGCG	2 cut(s)	279, 290
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	307
BsuRI	GGCC	4 cut(s)	144, 152, 239, 369
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	3 cut(s)	192, 203, 235
BtsCI	GGATG	2 cut(s)	360, 442
BtsIMutI	CAGTG	3 cut(s)	214, 690, 920
Cac8I	GCNNGC	5 cut(s)	108, 112, 288, 456, 644
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	7 cut(s)	69, 143, 223, 367, 368, 676, 889
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	5 cut(s)	241, 350, 404, 617, 656
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	5 cut(s)	298, 740, 812, 884, 895
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DraIII	CACNNNGTG	2 cut(s)	235, 611
EaeI	YGGCCR	2 cut(s)	150, 237
Eco105I	TACGTA	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	4 cut(s)	69, 223, 676, 889
Eco57I	CTGAAG	1 cut(s)	935
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	4 cut(s)	143, 223, 368, 889
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	118
EcoT22I	ATGCAT	2 cut(s)	802, 874
EcoT38I	GRGCYC	1 cut(s)	371
FaeI	CATG	5 cut(s)	244, 353, 407, 620, 659
FaqI	GGGAC	2 cut(s)	236, 902
FatI	CATG	5 cut(s)	240, 349, 403, 616, 655
FauI	CCCGC	3 cut(s)	213, 234, 295
FblI	GTMKAC	2 cut(s)	306, 416
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	2 cut(s)	367, 449
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	144, 152, 239, 369
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	5 cut(s)	244, 353, 407, 620, 659
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	2 cut(s)	652, 728
HphI	GGTGA	4 cut(s)	15, 404, 913, 937
Hpy166II	GTNNAC	5 cut(s)	72, 307, 417, 565, 651
Hpy188I	TCNGA	6 cut(s)	247, 252, 680, 813, 898, 915
Hpy188III	TCNNGA	1 cut(s)	617
Hpy8I	GTNNAC	5 cut(s)	72, 307, 417, 565, 651
Hpy99I	CGWCG	4 cut(s)	161, 196, 236, 256
HpyAV	CCTTC	4 cut(s)	518, 658, 700, 812
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	5 cut(s)	45, 99, 191, 202, 234
HpyCH4V	TGCA	4 cut(s)	458, 605, 800, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 287, 602
HpyF3I	CTNAG	5 cut(s)	298, 740, 812, 884, 895
HpySE526I	ACGT	5 cut(s)	45, 99, 191, 202, 234
Hsp92II	CATG	5 cut(s)	244, 353, 407, 620, 659
HspAI	GCGC	1 cut(s)	279
KflI	GGGWCCC	2 cut(s)	223, 889
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	527, 765
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	5 cut(s)	45, 99, 191, 202, 234
MaeIII	GTNAC	4 cut(s)	172, 392, 712, 918
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	764, 806
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	5 cut(s)	81, 273, 371, 762, 949
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	2 cut(s)	82, 691
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	3 cut(s)	275, 298, 703
Mox20I	TGGCCA	1 cut(s)	239
Mph1103I	ATGCAT	2 cut(s)	802, 874
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	4 cut(s)	42, 441, 492, 627
MslI	CAYNNNNRTG	3 cut(s)	264, 266, 402
Msp20I	TGGCCA	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	82
Mva1269I	GAATGC	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	2 cut(s)	279, 290
MwoI	GCNNNNNNNGC	3 cut(s)	226, 287, 602
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	5 cut(s)	244, 353, 407, 620, 659
NlaIV	GGNNCC	6 cut(s)	145, 224, 225, 369, 890, 891
NmuCI	GTSAC	3 cut(s)	392, 712, 918
NsiI	ATGCAT	2 cut(s)	802, 874
OliI	CACNNNNGTG	2 cut(s)	264, 266
PagI	TCATGA	1 cut(s)	616
PctI	GAATGC	1 cut(s)	800
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Ppu21I	YACGTR	1 cut(s)	100
PpuMI	RGGWCCY	2 cut(s)	223, 889
Psp5II	RGGWCCY	2 cut(s)	223, 889
Psp6I	CCWGG	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	6 cut(s)	145, 224, 225, 369, 890, 891
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	7 cut(s)	69, 143, 223, 367, 368, 676, 889
PspPPI	RGGWCCY	2 cut(s)	223, 889
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	3 cut(s)	264, 266, 402
SaqAI	TTAA	4 cut(s)	42, 441, 492, 627
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	7 cut(s)	69, 143, 223, 367, 368, 676, 889
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	5 cut(s)	81, 273, 371, 762, 949
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	2 cut(s)	456, 597
SinI	GGWCC	4 cut(s)	69, 223, 676, 889
SmiMI	CAYNNNNRTG	3 cut(s)	264, 266, 402
SnaBI	TACGTA	1 cut(s)	100
Sse9I	AATT	2 cut(s)	82, 691
SsiI	CCGC	6 cut(s)	220, 227, 288, 571, 646, 784
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	5 cut(s)	48, 102, 194, 205, 237
TasI	AATT	2 cut(s)	82, 691
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	4 cut(s)	42, 441, 492, 627
Tru9I	TTAA	4 cut(s)	42, 441, 492, 627
TscAI	CASTG	3 cut(s)	221, 690, 927
TseFI	GTSAC	3 cut(s)	392, 712, 918
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	3 cut(s)	392, 712, 918
TspDTI	ATGAA	3 cut(s)	342, 605, 807
TspGWI	ACGGA	2 cut(s)	52, 676
TspRI	CASTG	3 cut(s)	221, 690, 927
VpaK11BI	GGWCC	4 cut(s)	69, 223, 676, 889
XcmI	CCANNNNNNNNNTGG	2 cut(s)	213, 690
XmiI	GTMKAC	2 cut(s)	306, 416
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	2 cut(s)	802, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.