Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000010.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

131990 .. 133200

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000010.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgggaacttttagtaaaaaatattttgaaataggtggccggaaaaattcgtcggaatttcgtcgccagaaaaatcgcaggaaaaagtcacctaaggtcgccggaaaagttgcaagaaaagtcaccggtggtcggagcgaggctaacagtggcaagggctacgctgggcgttggctagtgctgtcgaggatctgtctgcgtgaggtgcgagggctgcgcggaggcttgcgagatttgtcgacgtggagcgaggctaacctgttgagggctatcgatagggatgcaggggtgcgcggaggcttgcaagcgaggctagcggtttcggttcagaaacttctgacggcaggttcaggaagattccggctgatcagccaggtgttagatggtctttcccagttaagggaagttgacttgaacaccaacaaaataagaagagctggagcccgagtgttggcgcaggctgtggttcagaagcctgattttaagttgctgaacatcaatggaaatttcatatctgatgaaggcatacatgaggtaacgggtttattcaagaaatctcctcacctgcttggccctttggatgagaatgaccctgaaggagaggatgatgatgctgaagacgatgaagaatctggagatgatgaagttaatgatgacgggttaggatcaaagctgaagaatctcaaagttaaccaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005819 GO:0005856 GO:0006810 GO:0006913 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009524 GO:0009536 GO:0009628 GO:0009651 GO:0012505 GO:0015630 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

233

Amino Acids

25.65

Weight (kDa)

9.61

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	573
Acc36I	ACCTGC	2 cut(s)	335, 573
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	2 cut(s)	219, 294
AciI	CCGC	3 cut(s)	219, 294, 317
AclWI	GGATC	2 cut(s)	197, 673
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	46, 56, 505
AcuI	CTGAAG	3 cut(s)	615, 636, 695
AfiI	CCNNNNNNNGG	5 cut(s)	132, 265, 399, 400, 451
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	29, 415, 550
AjiI	CACGTC	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	437, 673
AluI	AGCT	2 cut(s)	437, 673
AlwI	GGATC	2 cut(s)	197, 673
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	37, 571
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	3 cut(s)	46, 56, 505
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	219, 294, 457
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	81, 115, 554
AsuNHI	GCTAGC	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	444
AxyI	CCTNAGG	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	366
BfaI	CTAG	2 cut(s)	176, 314
BfuAI	ACCTGC	2 cut(s)	335, 573
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	271, 601
BmtI	GCTAGC	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	2 cut(s)	459, 654
Bsa29I	ATCGAT	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 265, 399, 400, 451
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	273
BseGI	GGATG	3 cut(s)	286, 586, 610
BseLI	CCNNNNNNNGG	5 cut(s)	132, 265, 399, 400, 451
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	219, 294
BshFI	GGCC	2 cut(s)	39, 573
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	4 cut(s)	40, 102, 126, 361
BslI	CCNNNNNNNGG	5 cut(s)	132, 265, 399, 400, 451
BsnI	GGCC	2 cut(s)	39, 573
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	189, 366, 665
BspACI	CCGC	3 cut(s)	219, 294, 317
BspANI	GGCC	2 cut(s)	39, 573
BspDI	ATCGAT	1 cut(s)	273
BspFNI	CGCG	2 cut(s)	219, 294
BspLI	GGNNCC	1 cut(s)	442
BspMI	ACCTGC	2 cut(s)	335, 573
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	2 cut(s)	197, 673
BspQI	GCTCTTC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	3 cut(s)	189, 366, 665
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	427
BstC8I	GCNNGC	5 cut(s)	227, 302, 306, 315, 459
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	286, 586, 610
BstFNI	CGCG	2 cut(s)	219, 294
BstHHI	GCGC	3 cut(s)	219, 294, 457
BstKTI	GATC	3 cut(s)	192, 369, 668
BstMBI	GATC	3 cut(s)	189, 366, 665
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 214, 310, 314
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstUI	CGCG	2 cut(s)	219, 294
BstV1I	GCAGC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	39, 573
BsuTUI	ATCGAT	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	286, 586, 610
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	2 cut(s)	335, 573
Cac8I	GCNNGC	5 cut(s)	227, 302, 306, 315, 459
CfoI	GCGC	3 cut(s)	219, 294, 457
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	572
ClaI	ATCGAT	1 cut(s)	273
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	530
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	3 cut(s)	191, 368, 667
DpnII	GATC	3 cut(s)	189, 366, 665
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	445
Eco57I	CTGAAG	3 cut(s)	615, 636, 695
Eco81I	CCTNAGG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	445
FaeI	CATG	1 cut(s)	533
FaiI	YATR	3 cut(s)	512, 527, 531
FatI	CATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	3 cut(s)	293, 593, 617
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	176, 314
GlaI	GCGC	3 cut(s)	218, 293, 456
GluI	GCNGC	1 cut(s)	215
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	2 cut(s)	459, 654
HaeIII	GGCC	2 cut(s)	39, 573
HapII	CCGG	4 cut(s)	40, 102, 126, 361
HhaI	GCGC	3 cut(s)	219, 294, 457
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	3 cut(s)	217, 292, 455
HinP1I	GCGC	3 cut(s)	217, 292, 455
HincII	GTYRAC	3 cut(s)	240, 409, 691
HindII	GTYRAC	3 cut(s)	240, 409, 691
HinfI	GANTC	3 cut(s)	357, 629, 679
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	4 cut(s)	40, 102, 126, 361
HphI	GGTGA	3 cut(s)	81, 115, 554
Hpy166II	GTNNAC	3 cut(s)	240, 409, 691
Hpy188I	TCNGA	6 cut(s)	55, 135, 330, 339, 471, 517
Hpy188III	TCNNGA	3 cut(s)	351, 550, 633
Hpy8I	GTNNAC	3 cut(s)	240, 409, 691
Hpy99I	CGWCG	3 cut(s)	55, 66, 244
HpyAV	CCTTC	2 cut(s)	515, 590
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	113, 284, 304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 214, 310, 314
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	3 cut(s)	217, 292, 455
Ksp22I	TGATCA	1 cut(s)	366
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	189, 366, 665
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	3 cut(s)	135, 246, 440
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	2 cut(s)	271, 601
MaeI	CTAG	2 cut(s)	176, 314
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	87, 121, 535
MalI	GATC	3 cut(s)	191, 368, 667
MboI	GATC	3 cut(s)	189, 366, 665
MboII	GAAGA	5 cut(s)	366, 444, 629, 638, 688
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	3 cut(s)	46, 56, 505
MmeI	TCCRAC	2 cut(s)	33, 113
MseI	TTAA	4 cut(s)	398, 483, 648, 690
MspI	CCGG	4 cut(s)	40, 102, 126, 361
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	2 cut(s)	219, 294
MwoI	GCNNNNNNNGC	4 cut(s)	205, 214, 310, 314
NdeII	GATC	3 cut(s)	189, 366, 665
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	87, 121
PaqCI	CACCTGC	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	357, 629, 679
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	189
SalI	GTCGAC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	4 cut(s)	398, 483, 648, 690
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	189, 366, 665
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	271, 601
SgrAI	CRCCGGYG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	46, 56, 505
SsiI	CCGC	3 cut(s)	219, 294, 317
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	2 cut(s)	176, 314
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	185, 239, 273
TasI	AATT	3 cut(s)	46, 56, 505
TfiI	GAWTC	3 cut(s)	357, 629, 679
Tru1I	TTAA	4 cut(s)	398, 483, 648, 690
Tru9I	TTAA	4 cut(s)	398, 483, 648, 690
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	87, 121
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	2 cut(s)	87, 121
TspDTI	ATGAA	4 cut(s)	499, 534, 639, 657
TspRI	CASTG	1 cut(s)	154
XapI	RAATTY	3 cut(s)	46, 56, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	2 cut(s)	176, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.