Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000011.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

294626 .. 300826

Gene Structure 6201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgggtagtcttgaggcggagagaacaactgtgggatgggctgcaagagactcttctgggattctctcaccttacacctataatcttaggagcacagggccagaagatgtttatatcaaagttctgaactgtggaatttgccattccgatcttcaccagatcaaaaacgaacttggccagtcaaattatcccatggttgcagggcatgaagtggttggtgaagttttggaggtgggatcagatgtgaccaagttcaaagtaggagatgttgtcggagttggactccttgtaggttgctgcagaaactgcgacccatgcaagacagagaatgagcaatactgcaacaagaagatctggtcttacaatgacacatactccgatggcaagcccacccaaggtggctttgccaaatccttggtggccgaccaaaagtttgtggtgaagataccggagggcatggaaccggagcaggtggcgccgctgctttgtgcgggagtgacaatttacagcccactgaggcactttggtctggatgtgagtggattaaggggaggaatattgggacttggaggtgtgggacacatgggggtgaagatagcaaaggccatgggacaccatatcactgaggcacagctttcacatacaggctcgccattcacgaatcaacgcttctgggttttgattcgtggaccctttggtggagaaagtttgaatctttgcggaggcgttctaggcggcggcgacgacgcgcgacttgtaggagggaggacggaggcatcttggactgttctgggcagtgttcaaggtcggaggaggtcggggttgcaggttctgggcagcaacccgacctgcaactgcaggttttctgggcaaccctccaactacgtcgccggcgactccaccgactgcagactgctccgccctacccctggcgtccttccggcaaccctcgccgctccgtcgcgcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

323

Amino Acids

34.27

Weight (kDa)

7.53

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	3.6e-27	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	4 cut(s)	460, 817, 849, 857
AccB1I	GGYRCC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	956
AccII	CGCG	3 cut(s)	749, 751, 964
AciI	CCGC	8 cut(s)	17, 479, 491, 720, 735, 738, 919, 954
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	2 cut(s)	175, 420
AcsI	RAATTY	1 cut(s)	135
AcyI	GRCGYC	2 cut(s)	476, 933
AfiI	CCNNNNNNNGG	3 cut(s)	395, 698, 929
AgsI	TTSAA	3 cut(s)	256, 712, 803
AjnI	CCWGG	1 cut(s)	928
AluBI	AGCT	1 cut(s)	634
AluI	AGCT	1 cut(s)	634
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	306, 832
AoxI	GGCC	4 cut(s)	98, 175, 420, 603
ApeKI	GCWGC	4 cut(s)	41, 297, 481, 837
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspLEI	GCGC	3 cut(s)	478, 751, 966
AspS9I	GGNCC	2 cut(s)	98, 689
AsuHPI	GGTGA	5 cut(s)	60, 146, 230, 451, 601
AvaII	GGWCC	1 cut(s)	689
BalI	TGGCCA	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	4 cut(s)	28, 284, 468, 849
BccI	CCATC	2 cut(s)	30, 374
BciT130I	CCWGG	1 cut(s)	930
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	731, 970
BfmI	CTRYAG	3 cut(s)	298, 856, 907
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	4 cut(s)	460, 817, 849, 857
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	8 cut(s)	42, 298, 479, 482, 736, 739, 838, 954
BlsI	GCNGC	8 cut(s)	43, 299, 480, 483, 737, 740, 839, 955
Bme1390I	CCNGG	1 cut(s)	930
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	98, 689
BmiI	GGNNCC	3 cut(s)	462, 477, 691
BmrFI	CCNGG	1 cut(s)	930
BmsI	GCATC	1 cut(s)	785
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpuEI	CTTGAG	1 cut(s)	32
BsaHI	GRCGYC	2 cut(s)	476, 933
BsaJI	CCNNGG	5 cut(s)	192, 394, 414, 606, 928
BsaWI	WCCGGW	2 cut(s)	448, 463
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 359, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 698, 929
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	930
BseDI	CCNNGG	5 cut(s)	192, 394, 414, 606, 928
BseGI	GGATG	2 cut(s)	41, 538
BseLI	CCNNNNNNNGG	3 cut(s)	395, 698, 929
BseMII	CTCAG	2 cut(s)	506, 615
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	826
BseXI	GCAGC	4 cut(s)	28, 284, 468, 849
Bsh1236I	CGCG	3 cut(s)	749, 751, 964
BshFI	GGCC	4 cut(s)	100, 177, 422, 605
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	4 cut(s)	449, 464, 891, 941
BslFI	GGGAC	3 cut(s)	576, 591, 624
BslI	CCNNNNNNNGG	3 cut(s)	395, 698, 929
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	3 cut(s)	576, 591, 624
BsnI	GGCC	4 cut(s)	100, 177, 422, 605
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	148, 159, 236, 351
Bsp19I	CCATGG	2 cut(s)	192, 606
BspACI	CCGC	8 cut(s)	17, 479, 491, 720, 735, 738, 919, 954
BspANI	GGCC	4 cut(s)	100, 177, 422, 605
BspCNI	CTCAG	2 cut(s)	507, 616
BspFNI	CGCG	3 cut(s)	749, 751, 964
BspLI	GGNNCC	3 cut(s)	462, 477, 691
BspMAI	CTGCAG	3 cut(s)	302, 860, 911
BspMI	ACCTGC	4 cut(s)	460, 817, 849, 857
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	956
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	5 cut(s)	192, 394, 414, 606, 928
BssMI	GATC	4 cut(s)	148, 159, 236, 351
BssNI	GRCGYC	2 cut(s)	476, 933
BssT1I	CCWWGG	4 cut(s)	192, 394, 414, 606
Bst2UI	CCWGG	1 cut(s)	930
Bst4CI	ACNGT	3 cut(s)	31, 131, 787
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	2 cut(s)	476, 933
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	386, 650, 892
BstDEI	CTNAG	3 cut(s)	86, 515, 624
BstDSI	CCRYGG	2 cut(s)	192, 606
BstF5I	GGATG	2 cut(s)	41, 538
BstFNI	CGCG	3 cut(s)	749, 751, 964
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	3 cut(s)	478, 751, 966
BstKTI	GATC	4 cut(s)	151, 162, 239, 354
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	148, 159, 236, 351
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 315, 475, 732, 950
BstNI	CCWGG	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	928
BstSFI	CTRYAG	3 cut(s)	298, 856, 907
BstUI	CGCG	3 cut(s)	749, 751, 964
BstV1I	GCAGC	4 cut(s)	28, 284, 468, 849
BstX2I	RGATCY	1 cut(s)	351
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	100, 177, 422, 605
BtgI	CCRYGG	2 cut(s)	192, 606
BtsCI	GGATG	2 cut(s)	41, 538
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	512, 621, 802
BveI	ACCTGC	4 cut(s)	460, 817, 849, 857
Cac8I	GCNNGC	3 cut(s)	386, 650, 892
CaiI	CAGNNNCTG	2 cut(s)	306, 832
CfoI	GCGC	3 cut(s)	478, 751, 966
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	98, 689
CseI	GACGC	2 cut(s)	755, 922
CviAII	CATG	6 cut(s)	193, 206, 315, 457, 583, 607
DdeI	CTNAG	3 cut(s)	86, 515, 624
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	4 cut(s)	150, 161, 238, 353
DpnII	GATC	4 cut(s)	148, 159, 236, 351
EaeI	YGGCCR	2 cut(s)	175, 420
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	2 cut(s)	32, 908
Eco130I	CCWWGG	4 cut(s)	192, 394, 414, 606
Eco47I	GGWCC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	928
EcoT14I	CCWWGG	4 cut(s)	192, 394, 414, 606
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	4 cut(s)	192, 394, 414, 606
FaeI	CATG	6 cut(s)	196, 209, 318, 460, 586, 610
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	3 cut(s)	576, 591, 624
FatI	CATG	6 cut(s)	192, 205, 314, 456, 582, 606
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	8 cut(s)	42, 298, 479, 482, 736, 739, 838, 954
FokI	GGATG	2 cut(s)	48, 545
Fsp4HI	GCNGC	8 cut(s)	42, 298, 479, 482, 736, 739, 838, 954
FspBI	CTAG	2 cut(s)	731, 970
GlaI	GCGC	3 cut(s)	477, 750, 965
GluI	GCNGC	8 cut(s)	42, 298, 479, 482, 736, 739, 838, 954
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	100, 177, 422, 605
HapII	CCGG	4 cut(s)	449, 464, 891, 941
HgaI	GACGC	2 cut(s)	755, 922
HhaI	GCGC	3 cut(s)	478, 751, 966
Hin1I	GRCGYC	2 cut(s)	476, 933
Hin1II	CATG	6 cut(s)	196, 209, 318, 460, 586, 610
Hin6I	GCGC	3 cut(s)	476, 749, 964
HinP1I	GCGC	3 cut(s)	476, 749, 964
HinfI	GANTC	7 cut(s)	50, 61, 282, 661, 682, 712, 896
HpaII	CCGG	4 cut(s)	449, 464, 891, 941
HphI	GGTGA	5 cut(s)	60, 146, 230, 451, 601
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	6 cut(s)	126, 148, 241, 275, 379, 810
Hpy188III	TCNNGA	3 cut(s)	11, 530, 658
Hpy8I	GTNNAC	1 cut(s)	689
Hpy99I	CGWCG	4 cut(s)	746, 749, 890, 964
HpyAV	CCTTC	1 cut(s)	947
HpyCH4III	ACNGT	3 cut(s)	31, 131, 787
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	9 cut(s)	44, 200, 300, 318, 342, 826, 852, 858, 909
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 315, 475, 732, 950
HpyF3I	CTNAG	3 cut(s)	86, 515, 624
HpySE526I	ACGT	1 cut(s)	885
Hsp92I	GRCGYC	2 cut(s)	476, 933
Hsp92II	CATG	6 cut(s)	196, 209, 318, 460, 586, 610
HspAI	GCGC	3 cut(s)	476, 749, 964
KasI	GGCGCC	1 cut(s)	475
KroI	GCCGGC	1 cut(s)	890
KroNI	GCCGGC	1 cut(s)	892
Kzo9I	GATC	4 cut(s)	148, 159, 236, 351
LmnI	GCTCC	4 cut(s)	90, 466, 921, 961
Lsp1109I	GCAGC	4 cut(s)	28, 284, 468, 849
LweI	GCATC	1 cut(s)	785
MaeI	CTAG	2 cut(s)	731, 970
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	2 cut(s)	244, 496
MalI	GATC	4 cut(s)	150, 161, 238, 353
MbiI	CCGCTC	1 cut(s)	956
MboI	GATC	4 cut(s)	148, 159, 236, 351
MboII	GAAGA	6 cut(s)	45, 116, 143, 361, 454, 604
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	3 cut(s)	135, 184, 501
MluNI	TGGCCA	1 cut(s)	177
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	44, 276, 890
MmeI	TCCRAC	4 cut(s)	253, 259, 788, 903
Mox20I	TGGCCA	1 cut(s)	177
MreI	CGCCGGCG	1 cut(s)	890
MroNI	GCCGGC	1 cut(s)	890
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	4 cut(s)	449, 464, 891, 941
MspR9I	CCNGG	1 cut(s)	930
MvaI	CCWGG	1 cut(s)	930
MvnI	CGCG	3 cut(s)	749, 751, 964
MwoI	GCNNNNNNNGC	5 cut(s)	306, 315, 475, 732, 950
NaeI	GCCGGC	1 cut(s)	892
NarI	GGCGCC	1 cut(s)	476
NcoI	CCATGG	2 cut(s)	192, 606
NdeII	GATC	4 cut(s)	148, 159, 236, 351
NgoMIV	GCCGGC	1 cut(s)	890
NlaIII	CATG	6 cut(s)	196, 209, 318, 460, 586, 610
NlaIV	GGNNCC	3 cut(s)	462, 477, 691
NmuCI	GTSAC	2 cut(s)	244, 496
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	656, 891
PdiI	GCCGGC	1 cut(s)	892
PfeI	GAWTC	4 cut(s)	61, 661, 682, 712
PkrI	GCNGC	8 cut(s)	43, 299, 480, 483, 737, 740, 839, 955
PleI	GAGTC	3 cut(s)	44, 276, 890
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	3 cut(s)	44, 276, 890
Psp6I	CCWGG	1 cut(s)	928
PspGI	CCWGG	1 cut(s)	928
PspN4I	GGNNCC	3 cut(s)	462, 477, 691
PspPI	GGNCC	2 cut(s)	98, 689
PstI	CTGCAG	3 cut(s)	302, 860, 911
PstNI	CAGNNNCTG	2 cut(s)	306, 832
PsuI	RGATCY	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	8 cut(s)	42, 298, 479, 482, 736, 739, 838, 954
Sau3AI	GATC	4 cut(s)	148, 159, 236, 351
Sau96I	GGNCC	2 cut(s)	98, 689
SchI	GAGTC	3 cut(s)	44, 276, 890
ScrFI	CCNGG	1 cut(s)	930
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	785
SfcI	CTRYAG	3 cut(s)	298, 856, 907
SfoI	GGCGCC	1 cut(s)	477
SgrAI	CRCCGGYG	1 cut(s)	890
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	135, 184, 501
SsiI	CCGC	8 cut(s)	17, 479, 491, 720, 735, 738, 919, 954
SspDI	GGCGCC	1 cut(s)	475
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	2 cut(s)	731, 970
StyD4I	CCNGG	1 cut(s)	928
StyI	CCWWGG	4 cut(s)	192, 394, 414, 606
TaaI	ACNGT	3 cut(s)	31, 131, 787
TaiI	ACGT	1 cut(s)	888
TasI	AATT	3 cut(s)	135, 184, 501
TauI	GCSGC	4 cut(s)	481, 738, 741, 956
TfiI	GAWTC	4 cut(s)	61, 661, 682, 712
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	3 cut(s)	519, 628, 802
TseFI	GTSAC	2 cut(s)	244, 496
TseI	GCWGC	4 cut(s)	41, 297, 481, 837
Tsp45I	GTSAC	2 cut(s)	244, 496
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	785, 948
TspRI	CASTG	3 cut(s)	519, 628, 802
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	731, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.