Rmu_ssc0000017.1_g000001

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000017.1
N/A
Physical Location & Seq
Forward (+)
5 .. 355
351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
atgccaagagagaaagaagtgggtcatgaccgtgaatggtctgaaagaaggcatcggaatgatgtagatgttaatcgagagcgggacagagagcgtgataggggccgagaacgttctcgagatcgcgatcgtgacaggtacagggaagatagagaaagatatgctgatcatcataaatacagagatcatgaaacggtgcaccaggatgaaatagaaagggggaggtctacaaggacccatagtaaggcacgcttatctgaagatgatgaccgtcgttcaagatctagggaccgccgttcaagatctagggatgttgattatgggaagaggcggcggcttacttctgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

116

Amino Acids

14.74

Weight (kDa)

10.3

Isoelectric Point (pI)

75.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 227
AccII CGCG 1 cut(s) 126
AciI CCGC 4 cut(s) 82, 292, 331, 334
AclI AACGTT 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 2 cut(s) 279, 300
AjnI CCWGG 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 103
ApaLI GTGCAC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 103, 234, 289
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 2 cut(s) 234, 289
BaeGI GKGCMC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 166
BfaI CTAG 2 cut(s) 285, 306
BglII AGATCT 2 cut(s) 281, 302
BisI GCNGC 2 cut(s) 332, 335
BlsI GCNGC 2 cut(s) 333, 336
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 234, 289
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 3 cut(s) 103, 234, 289
BmiI GGNNCC 3 cut(s) 104, 236, 290
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 61
BsaBI GATNNNNATC 2 cut(s) 72, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse8I GATNNNNATC 2 cut(s) 72, 126
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 211, 316
BseJI GATNNNNATC 2 cut(s) 72, 126
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 98, 302
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 98, 302
BsnI GGCC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 6 cut(s) 121, 127, 166, 184, 281, 302
Bsp68I TCGCGA 1 cut(s) 126
BspACI CCGC 4 cut(s) 82, 292, 331, 334
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 2 cut(s) 25, 187
BspLI GGNNCC 3 cut(s) 104, 236, 290
BsrBI CCGCTC 1 cut(s) 82
BssMI GATC 6 cut(s) 121, 127, 166, 184, 281, 302
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 32, 196, 272
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 211, 316
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 6 cut(s) 124, 130, 169, 187, 284, 305
BstMBI GATC 6 cut(s) 121, 127, 166, 184, 281, 302
BstMCI CGRYCG 1 cut(s) 130
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 201
BstUI CGCG 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 281, 302
BstYI RGATCY 2 cut(s) 281, 302
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 211, 316
BtuMI TCGCGA 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 250
CciI TCATGA 2 cut(s) 25, 187
Cfr13I GGNCC 3 cut(s) 103, 234, 289
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 26, 188
CviJI RGCY 2 cut(s) 105, 337
CviKI_1 RGCY 2 cut(s) 105, 337
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 345
DpnI GATC 6 cut(s) 123, 129, 168, 186, 283, 304
DpnII GATC 6 cut(s) 121, 127, 166, 184, 281, 302
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 234, 289
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 29, 191
FaiI YATR 6 cut(s) 27, 162, 174, 189, 240, 321
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 98, 302
FatI CATG 2 cut(s) 25, 187
FauI CCCGC 1 cut(s) 75
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 332, 335
FokI GGATG 2 cut(s) 218, 323
Fsp4HI GCNGC 2 cut(s) 332, 335
FspBI CTAG 2 cut(s) 285, 306
GluI GCNGC 2 cut(s) 332, 335
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 2 cut(s) 29, 191
Hpy166II GTNNAC 2 cut(s) 199, 228
Hpy188I TCNGA 4 cut(s) 43, 57, 259, 346
Hpy188III TCNNGA 9 cut(s) 26, 77, 117, 119, 125, 131, 188, 279, 300
Hpy8I GTNNAC 2 cut(s) 199, 228
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 3 cut(s) 32, 196, 272
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 2 cut(s) 29, 191
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 6 cut(s) 121, 127, 166, 184, 281, 302
LpnPI CCDG 4 cut(s) 121, 127, 188, 215
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 285, 306
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 131
MalI GATC 6 cut(s) 123, 129, 168, 186, 283, 304
MbiI CCGCTC 1 cut(s) 82
MboI GATC 6 cut(s) 121, 127, 166, 184, 281, 302
MboII GAAGA 3 cut(s) 158, 272, 337
MflI RGATCY 2 cut(s) 281, 302
MhlI GDGCHC 1 cut(s) 201
MnlI CCTC 2 cut(s) 216, 321
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 3 cut(s) 30, 57, 204
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 126
NdeII GATC 6 cut(s) 121, 127, 166, 184, 281, 302
NlaIII CATG 2 cut(s) 29, 191
NlaIV GGNNCC 3 cut(s) 104, 236, 290
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 131
NruI TCGCGA 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 117
PagI TCATGA 2 cut(s) 25, 187
PkrI GCNGC 2 cut(s) 333, 336
Ple19I CGATCG 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 104, 236, 290
PspPI GGNCC 3 cut(s) 103, 234, 289
PspPPI RGGWCCY 1 cut(s) 234
PsuI RGATCY 2 cut(s) 281, 302
PvuI CGATCG 1 cut(s) 130
RruI TCGCGA 1 cut(s) 126
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 3 cut(s) 30, 57, 204
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 332, 335
Sau3AI GATC 6 cut(s) 121, 127, 166, 184, 281, 302
Sau96I GGNCC 3 cut(s) 103, 234, 289
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 201
SetI ASST 3 cut(s) 115, 140, 227
SfaNI GCATC 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 117
SinI GGWCC 2 cut(s) 234, 289
SlaI CTCGAG 1 cut(s) 117
SmiMI CAYNNNNRTG 3 cut(s) 30, 57, 204
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SsiI CCGC 4 cut(s) 82, 292, 331, 334
SspMI CTAG 2 cut(s) 285, 306
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 32, 196, 272
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 76, 118
TauI GCSGC 2 cut(s) 334, 337
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 204, 222
VneI GTGCAC 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 234, 289
XhoI CTCGAG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 2 cut(s) 285, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.