Rmu_ssc0000018.1_g000054

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000018.1
N/A
Physical Location & Seq
Reverse (-)
261507 .. 261851
345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
atggatgatccgctccagtccaagtatctaaatgaagaagatcccaaaaggttgtgggtctcactcgaagaacgctttagcaacgtccgtgactccctgcttcctaacctacaagtgagatggcataatctccgcttctgtgatttcaagacagtatttggctacaactcggaagcaattcgcattaaatccttcatggaattctatggaaaagatatcacatatgtgatgatgattgagaggactctttctaccttctccgtctctactttgatagtcactaagagctatcgaatcgatgttactgtaagacagatcacaaggtttcatgagctggagccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.72

Weight (kDa)

6.73

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 13
AciI CCGC 2 cut(s) 11, 133
AclWI GGATC 2 cut(s) 2, 35
AcsI RAATTY 1 cut(s) 200
AgsI TTSAA 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 2 cut(s) 288, 334
AluI AGCT 2 cut(s) 288, 334
Alw26I GTCTC 2 cut(s) 64, 268
AlwI GGATC 2 cut(s) 2, 35
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 177
BccI CCATC 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 64, 268
BmiI GGNNCC 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 64, 268
BsmBI CGTCTC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 7, 40, 315
BspACI CCGC 2 cut(s) 11, 133
BspDI ATCGAT 1 cut(s) 297
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 2 cut(s) 2, 35
BspTNI GGTCTC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 16
BssMI GATC 3 cut(s) 7, 40, 315
Bst4CI ACNGT 2 cut(s) 154, 307
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 10, 43, 318
BstMAI GTCTC 2 cut(s) 64, 268
BstMBI GATC 3 cut(s) 7, 40, 315
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 3 cut(s) 196, 329, 342
CviJI RGCY 4 cut(s) 162, 288, 334, 340
CviKI_1 RGCY 4 cut(s) 162, 288, 334, 340
DdeI CTNAG 1 cut(s) 282
DpnI GATC 3 cut(s) 9, 42, 317
DpnII GATC 3 cut(s) 7, 40, 315
Eco31I GGTCTC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 200
EcoRV GATATC 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 3 cut(s) 199, 332, 345
FaiI YATR 7 cut(s) 126, 197, 207, 223, 225, 330, 343
FatI CATG 3 cut(s) 195, 328, 341
FauNDI CATATG 1 cut(s) 223
FokI GGATG 1 cut(s) 17
Hin1II CATG 3 cut(s) 199, 332, 345
HinfI GANTC 3 cut(s) 92, 244, 294
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 148, 329
HpyAV CCTTC 2 cut(s) 202, 265
HpyCH4III ACNGT 2 cut(s) 154, 307
HpyCH4IV ACGT 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 199, 332, 345
Kzo9I GATC 3 cut(s) 7, 40, 315
LmnI GCTCC 2 cut(s) 18, 337
LpnPI CCDG 3 cut(s) 29, 110, 320
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 89, 277, 301
MalI GATC 3 cut(s) 9, 42, 317
MbiI CCGCTC 1 cut(s) 13
MboI GATC 3 cut(s) 7, 40, 315
MboII GAAGA 3 cut(s) 47, 50, 80
MflI RGATCY 1 cut(s) 40
MluCI AATT 2 cut(s) 177, 200
MlyI GAGTC 2 cut(s) 86, 238
MnlI CCTC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 224
NdeI CATATG 1 cut(s) 223
NdeII GATC 3 cut(s) 7, 40, 315
NlaIII CATG 3 cut(s) 199, 332, 345
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 89, 277
OliI CACNNNNGTG 1 cut(s) 224
PagI TCATGA 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 294
PleI GAGTC 2 cut(s) 86, 238
PpsI GAGTC 2 cut(s) 86, 238
PspN4I GGNNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 3 cut(s) 7, 40, 315
SchI GAGTC 2 cut(s) 86, 238
SetI ASST 7 cut(s) 53, 87, 111, 257, 290, 326, 336
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 2 cut(s) 177, 200
SsiI CCGC 2 cut(s) 11, 133
TaaI ACNGT 2 cut(s) 154, 307
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 66, 292, 297
TasI AATT 2 cut(s) 177, 200
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 2 cut(s) 89, 277
Tsp45I GTSAC 2 cut(s) 89, 277
TspDTI ATGAA 3 cut(s) 48, 184, 317
TspGWI ACGGA 2 cut(s) 77, 250
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.