Rmu_ssc0000028.1_g000002

Calcium-binding EF hand family protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000028.1
N/A
Physical Location & Seq
Forward (+)
7602 .. 7916
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
atgcagcttttagctgatgagaagcaattgaacaatgtcgtagagaagatattgcaagggaagaaggatgacttggggagtgcagaagtaatcaggagttatcttgagaaaaatgggctagagttggggttgccaccatctgaaggtgacgaggcagtggctattttatatgatctagtgtttgctgagcttaaggaagacaagagtgctctgaaagaaggcgaagataaatttgaaaatcttgtgaagaagatccttgagaaacttgcggagcagctagaagctaatcctgtatttcatgatactgagcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

4.55

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 143
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 31, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 5 cut(s) 7, 14, 190, 277, 284
AluI AGCT 5 cut(s) 7, 14, 190, 277, 284
Alw21I GWGCWC 2 cut(s) 211, 312
AlwI GGATC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 4, 274
ApoI RAATTY 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 211, 312
BbvI GCAGC 2 cut(s) 16, 286
BccI CCATC 1 cut(s) 145
BfaI CTAG 3 cut(s) 119, 176, 278
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 5, 275
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 2 cut(s) 6, 276
BpiI GAAGAC 1 cut(s) 204
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 125, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 177, 297
BseXI GCAGC 2 cut(s) 16, 286
BsgI GTGCAG 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 211, 312
BslI CCNNNNNNNGG 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 211, 312
Bsp143I GATC 2 cut(s) 172, 252
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 1 cut(s) 269
BspCNI CTCAG 2 cut(s) 178, 298
BspHI TCATGA 1 cut(s) 298
BspPI GGATC 1 cut(s) 247
BspTI CTTAAG 1 cut(s) 191
BssMI GATC 2 cut(s) 172, 252
BstAFI CTTAAG 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 186, 306
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 175, 255
BstMBI GATC 2 cut(s) 172, 252
BstV1I GCAGC 2 cut(s) 16, 286
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 310
CciI TCATGA 1 cut(s) 298
CviAII CATG 1 cut(s) 299
CviJI RGCY 7 cut(s) 7, 14, 118, 161, 190, 277, 284
CviKI_1 RGCY 7 cut(s) 7, 14, 118, 161, 190, 277, 284
DdeI CTNAG 2 cut(s) 186, 306
DpnI GATC 2 cut(s) 174, 254
DpnII GATC 2 cut(s) 172, 252
Eco57I CTGAAG 1 cut(s) 162
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 169, 171, 300
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 5, 275
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 5, 275
FspBI CTAG 3 cut(s) 119, 176, 278
GluI GCNGC 2 cut(s) 5, 275
Hin1II CATG 1 cut(s) 302
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 142, 213
Hpy188III TCNNGA 3 cut(s) 94, 104, 299
HpyAV CCTTC 3 cut(s) 58, 137, 212
HpyCH4V TGCA 3 cut(s) 4, 55, 83
HpyF3I CTNAG 2 cut(s) 186, 306
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 2 cut(s) 172, 252
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 2 cut(s) 79, 303
Lsp1109I GCAGC 2 cut(s) 16, 286
MaeI CTAG 3 cut(s) 119, 176, 278
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 174, 254
MboI GATC 2 cut(s) 172, 252
MboII GAAGA 6 cut(s) 58, 73, 209, 236, 259, 262
MfeI CAATTG 1 cut(s) 26
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 211, 312
MluCI AATT 2 cut(s) 26, 230
MnlI CCTC 1 cut(s) 145
MseI TTAA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 191
MunI CAATTG 1 cut(s) 26
NdeII GATC 2 cut(s) 172, 252
NlaIII CATG 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 146
PagI TCATGA 1 cut(s) 298
PkrI GCNGC 2 cut(s) 6, 276
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 5, 275
Sau3AI GATC 2 cut(s) 172, 252
SduI GDGCHC 2 cut(s) 211, 312
SetI ASST 6 cut(s) 9, 16, 148, 192, 279, 286
SmlI CTYRAG 3 cut(s) 104, 191, 257
SmoI CTYRAG 3 cut(s) 104, 191, 257
Sse9I AATT 2 cut(s) 26, 230
SsiI CCGC 1 cut(s) 269
SspMI CTAG 3 cut(s) 119, 176, 278
TasI AATT 2 cut(s) 26, 230
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 4, 274
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 287
TspRI CASTG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 191
XapI RAATTY 1 cut(s) 230
XspI CTAG 3 cut(s) 119, 176, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.