Rmu_ssc0000046.1_g000007

Translationally controlled tumour protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000046.1
N/A
Physical Location & Seq
Reverse (-)
21830 .. 26692
4863 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
atgcgccggcgtccaattccgcctcttttccctctcaatctcaagcgcgcgaagacggaagaaccacccggcgaaaaaaaaacacacaaagccttcggttacaaatttgacgatcacgaatgggaccccgaaacgacgtcgtggggatcagaagcggagacgaagaaagacgctatatataatgatgtagtgtgggtggcagcccatagtagccctatactaggtctgccaatgcttacaggtatcagtaatttcgaagatgaaattcagggagcaattgaactagatattggggctaacccatcggccgaaggcgggggtgatgaagatgaaggtgttgatgaccaggccgtcaagttgagccgtggctgcggagtggactcggggctctgccggggagtagcggtgtctggtgacggtcggaatttagcgggctatttcgatggaatggatcggatgttgcttgactggttgtcgacgatgatagaactgccggttggttatggcgtagagttcaaggtgcggcagcaacaacatccttttatgtccgacatcagtggtggagacggggtggaggcgcgacaaggctggtctaggccaggaagggttggggatggccgccttctgggtttgattttctgggctttggcactggttgtgggcccattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

223

Amino Acids

24.27

Weight (kDa)

4.77

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
AatII GACGTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 476
AccII CGCG 3 cut(s) 48, 50, 580
AciI CCGC 8 cut(s) 20, 155, 315, 372, 404, 431, 523, 619
AclWI GGATC 2 cut(s) 154, 459
AcoI YGGCCR 2 cut(s) 306, 616
AcsI RAATTY 3 cut(s) 104, 264, 424
AcyI GRCGYC 2 cut(s) 10, 137
AfiI CCNNNNNNNGG 3 cut(s) 221, 315, 625
AgsI TTSAA 2 cut(s) 281, 517
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 2 cut(s) 345, 598
AjuI GAANNNNNNNTTGG 4 cut(s) 273, 305, 480, 512
Alw26I GTCTC 2 cut(s) 152, 558
AlwI GGATC 2 cut(s) 154, 459
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 5 cut(s) 306, 348, 596, 616, 661
ApaI GGGCCC 1 cut(s) 665
ApeKI GCWGC 3 cut(s) 200, 369, 526
ApoI RAATTY 3 cut(s) 104, 264, 424
AspLEI GCGC 4 cut(s) 6, 48, 50, 580
AspS9I GGNCC 3 cut(s) 124, 661, 662
AsuC2I CCSGG 2 cut(s) 69, 395
AsuHPI GGTGA 2 cut(s) 332, 425
AsuII TTCGAA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 665
BanII GRGCYC 2 cut(s) 390, 665
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 212, 356, 538
BccI CCATC 3 cut(s) 310, 437, 608
BceAI ACGGC 2 cut(s) 335, 348
BciT130I CCWGG 2 cut(s) 347, 600
BcnI CCSGG 2 cut(s) 69, 395
BcoDI GTCTC 2 cut(s) 152, 558
BfaI CTAG 3 cut(s) 221, 284, 594
BisI GCNGC 5 cut(s) 201, 370, 524, 527, 619
BlsI GCNGC 5 cut(s) 202, 371, 525, 528, 620
Bme1390I CCNGG 4 cut(s) 69, 347, 395, 600
Bme18I GGWCC 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 124, 661, 662
BmiI GGNNCC 3 cut(s) 125, 126, 663
BmrFI CCNGG 4 cut(s) 69, 347, 395, 600
BpiI GAAGAC 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 2 cut(s) 69, 395
BsaHI GRCGYC 2 cut(s) 10, 137
BsaJI CCNNGG 2 cut(s) 364, 394
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 555, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 315, 625
Bse118I RCCGGY 2 cut(s) 6, 493
Bse1I ACTGG 2 cut(s) 473, 657
BseBI CCWGG 2 cut(s) 347, 600
BseDI CCNNGG 2 cut(s) 364, 394
BseGI GGATG 3 cut(s) 462, 535, 619
BseLI CCNNNNNNNGG 3 cut(s) 221, 315, 625
BseNI ACTGG 2 cut(s) 473, 657
BsePI GCGCGC 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 665
BseX3I CGGCCG 1 cut(s) 306
BseXI GCAGC 3 cut(s) 212, 356, 538
Bsh1236I CGCG 3 cut(s) 48, 50, 580
Bsh1285I CGRYCG 2 cut(s) 309, 421
BshFI GGCC 5 cut(s) 308, 350, 598, 618, 663
BsiEI CGRYCG 2 cut(s) 309, 421
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 4 cut(s) 7, 69, 394, 494
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 221, 315, 625
BsmAI GTCTC 2 cut(s) 152, 558
BsmBI CGTCTC 2 cut(s) 152, 558
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 5 cut(s) 308, 350, 598, 618, 663
BsoBI CYCGRG 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 255
Bsp120I GGGCCC 1 cut(s) 661
Bsp1286I GDGCHC 2 cut(s) 390, 665
Bsp143I GATC 3 cut(s) 112, 146, 451
BspACI CCGC 8 cut(s) 20, 155, 315, 372, 404, 431, 523, 619
BspANI GGCC 5 cut(s) 308, 350, 598, 618, 663
BspFNI CGCG 3 cut(s) 48, 50, 580
BspLI GGNNCC 3 cut(s) 125, 126, 663
BspPI GGATC 2 cut(s) 154, 459
BspT104I TTCGAA 1 cut(s) 255
BsrFI RCCGGY 2 cut(s) 6, 493
BsrI ACTGG 2 cut(s) 473, 657
BssAI RCCGGY 2 cut(s) 6, 493
BssECI CCNNGG 2 cut(s) 364, 394
BssHII GCGCGC 1 cut(s) 46
BssMI GATC 3 cut(s) 112, 146, 451
BssNI GRCGYC 2 cut(s) 10, 137
Bst2UI CCWGG 2 cut(s) 347, 600
Bst4CI ACNGT 1 cut(s) 419
BstACI GRCGYC 2 cut(s) 10, 137
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 8, 48, 433
BstDSI CCRYGG 1 cut(s) 364
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 462, 535, 619
BstFNI CGCG 3 cut(s) 48, 50, 580
BstHHI GCGC 4 cut(s) 6, 48, 50, 580
BstKTI GATC 3 cut(s) 115, 149, 454
BstMAI GTCTC 2 cut(s) 152, 558
BstMBI GATC 3 cut(s) 112, 146, 451
BstMCI CGRYCG 2 cut(s) 309, 421
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 2 cut(s) 347, 600
BstSCI CCNGG 4 cut(s) 67, 345, 393, 598
BstSLI GKGCMC 1 cut(s) 665
BstUI CGCG 3 cut(s) 48, 50, 580
BstV1I GCAGC 3 cut(s) 212, 356, 538
BstV2I GAAGAC 1 cut(s) 59
BstZI CGGCCG 1 cut(s) 306
BsuRI GGCC 5 cut(s) 308, 350, 598, 618, 663
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 3 cut(s) 462, 535, 619
BtsIMutI CAGTG 2 cut(s) 562, 650
Cac8I GCNNGC 3 cut(s) 8, 48, 433
CfoI GCGC 4 cut(s) 6, 48, 50, 580
Cfr10I RCCGGY 2 cut(s) 6, 493
Cfr13I GGNCC 3 cut(s) 124, 661, 662
CseI GACGC 1 cut(s) 179
DpnI GATC 3 cut(s) 114, 148, 453
DpnII GATC 3 cut(s) 112, 146, 451
DrdI GACNNNNNNGTC 1 cut(s) 350
DriI GACNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 2 cut(s) 306, 616
EagI CGGCCG 1 cut(s) 306
Eam1105I GACNNNNNGTC 1 cut(s) 472
EciI GGCGGA 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 390, 665
Eco47I GGWCC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 345, 598
EcoT38I GRGCYC 2 cut(s) 390, 665
Esp3I CGTCTC 2 cut(s) 152, 558
FaiI YATR 8 cut(s) 176, 178, 180, 207, 218, 504, 545, 670
FaqI GGGAC 1 cut(s) 137
FauI CCCGC 2 cut(s) 308, 424
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 5 cut(s) 201, 370, 524, 527, 619
FokI GGATG 3 cut(s) 469, 522, 626
FriOI GRGCYC 2 cut(s) 390, 665
Fsp4HI GCNGC 5 cut(s) 201, 370, 524, 527, 619
FspBI CTAG 3 cut(s) 221, 284, 594
GlaI GCGC 4 cut(s) 5, 47, 49, 579
GluI GCNGC 5 cut(s) 201, 370, 524, 527, 619
HaeIII GGCC 5 cut(s) 308, 350, 598, 618, 663
HapII CCGG 4 cut(s) 7, 69, 394, 494
HgaI GACGC 1 cut(s) 179
HhaI GCGC 4 cut(s) 6, 48, 50, 580
Hin1I GRCGYC 2 cut(s) 10, 137
Hin6I GCGC 4 cut(s) 4, 46, 48, 578
HinP1I GCGC 4 cut(s) 4, 46, 48, 578
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 1 cut(s) 380
HpaII CCGG 4 cut(s) 7, 69, 394, 494
HphI GGTGA 2 cut(s) 332, 425
Hpy166II GTNNAC 2 cut(s) 379, 477
Hpy188I TCNGA 4 cut(s) 151, 423, 456, 550
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 2 cut(s) 379, 477
Hpy99I CGWCG 3 cut(s) 139, 142, 481
HpyAV CCTTC 5 cut(s) 103, 305, 326, 597, 632
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 2 cut(s) 10, 137
HspAI GCGC 4 cut(s) 4, 46, 48, 578
KflI GGGWCCC 1 cut(s) 124
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 112, 146, 451
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 3 cut(s) 212, 356, 538
MaeI CTAG 3 cut(s) 221, 284, 594
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 98, 413
MalI GATC 3 cut(s) 114, 148, 453
MboI GATC 3 cut(s) 112, 146, 451
MboII GAAGA 5 cut(s) 64, 71, 175, 269, 338
MfeI CAATTG 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 390, 665
MluCI AATT 6 cut(s) 15, 104, 250, 264, 276, 424
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 401, 573
MnlI CCTC 3 cut(s) 33, 42, 568
MreI CGCCGGCG 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 6
MspI CCGG 4 cut(s) 7, 69, 394, 494
MspR9I CCNGG 4 cut(s) 69, 347, 395, 600
MunI CAATTG 1 cut(s) 276
MvaI CCWGG 2 cut(s) 347, 600
MvnI CGCG 3 cut(s) 48, 50, 580
MwoI GCNNNNNNNGC 1 cut(s) 369
NaeI GCCGGC 1 cut(s) 8
NciI CCSGG 2 cut(s) 69, 395
NdeII GATC 3 cut(s) 112, 146, 451
NgoMIV GCCGGC 1 cut(s) 6
NlaIV GGNNCC 3 cut(s) 125, 126, 663
NmuCI GTSAC 1 cut(s) 413
NspV TTCGAA 1 cut(s) 255
PauI GCGCGC 1 cut(s) 46
PdiI GCCGGC 1 cut(s) 8
PkrI GCNGC 5 cut(s) 202, 371, 525, 528, 620
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 345, 598
PspGI CCWGG 2 cut(s) 345, 598
PspN4I GGNNCC 3 cut(s) 125, 126, 663
PspOMI GGGCCC 1 cut(s) 661
PspPI GGNCC 3 cut(s) 124, 661, 662
PspPPI RGGWCCY 1 cut(s) 124
PteI GCGCGC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 475
SatI GCNGC 5 cut(s) 201, 370, 524, 527, 619
Sau3AI GATC 3 cut(s) 112, 146, 451
Sau96I GGNCC 3 cut(s) 124, 661, 662
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 4 cut(s) 69, 347, 395, 600
SduI GDGCHC 2 cut(s) 390, 665
SetI ASST 5 cut(s) 140, 226, 244, 337, 522
SfuI TTCGAA 1 cut(s) 255
SgrAI CRCCGGYG 1 cut(s) 6
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 6 cut(s) 15, 104, 250, 264, 276, 424
SsiI CCGC 8 cut(s) 20, 155, 315, 372, 404, 431, 523, 619
SspMI CTAG 3 cut(s) 221, 284, 594
StyD4I CCNGG 4 cut(s) 67, 345, 393, 598
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 255, 441, 476
TasI AATT 6 cut(s) 15, 104, 250, 264, 276, 424
TauI GCSGC 2 cut(s) 526, 621
TscAI CASTG 2 cut(s) 562, 657
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 3 cut(s) 200, 369, 526
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 276, 339, 345
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 562, 657
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 3 cut(s) 104, 264, 424
XmiI GTMKAC 1 cut(s) 476
XspI CTAG 3 cut(s) 221, 284, 594
ZraI GACGTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.